KEGG   Vitis vinifera (wine grape): 100267652
Entry
100267652         CDS       T01084                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
  KO
K15172  transcription elongation factor SPT5
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100267652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100267652
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100267652
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     100267652
  RNA polymerase I system
     100267652
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     100267652
SSDB
Motif
Pfam: KOW1_SPT5 KOW KOW4_SPT5 Spt5-NGN KOW6_SPT51-2 KOW2_Spt5 KOW7_SPT5 KOW5_SPT5 KOWx_SPT5 Spt5_N GPKOW_C DUF4438 ProQ_C
Other DBs
NCBI-GeneID: 100267652
NCBI-ProteinID: XP_002265283
UniProt: E0CQN1
LinkDB
Position
18:join(13444857..13445166,13446377..13446615,13446729..13446875,13447003..13447161,13447277..13447360,13447498..13447568,13448115..13448472,13448581..13448736,13448843..13448940,13449021..13449069,13449147..13449299,13449382..13449525,13449678..13449771,13449926..13450084,13450173..13450221,13450318..13450412,13450522..13450600,13451819..13451876,13451973..13452090,13452166..13452303,13453064..13453164,13453729..13453974)
AA seq 1034 aa
MPRRRHDDDDDDLEPEEDDVLDDDEDYEDEDVGVGSSRKRSRSEFIDDVAEEDDDEDDDD
DDEDFGGSRRGSHRAKRRSGSEFLDLEAAVDSDEEEEEEDGEDDFIVDAGAELPDEDDGQ
RMRRRPLLPQEDEQEDFEALERKIQERYGKSSHAEYDEETTEVEQQALLPSVRDPKLWMV
KCAIGHEREAAVCLMQKSIDKGPEVQIRSAIALDHLKNYIYIEADKEAHVKEACKGLRNI
YAQKVMLVPIREMTDVLSVESKAVDLSRNTWVRMKIGTYKGDLAKVVDVDNVRQRVTVQL
IPRIDLQALANKLEGREVVTKKAFKPPPRFMNVEEAREMHIRVERRRDPMTGDYFENIGG
MMFKDGFLYKTVSMKSISVQNIQPTFDELEKFRTPGETEDGDMASLSTLFANRKKGHFMK
GDAVIIVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKYFEPGNHVKVVS
GTQEGATGMVVKVEGHVLIILSDTTKEHLRVFADDVVESSEVTSGVTRIGDYELHDLVLL
DNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKFKIDKRVNVQDRFKNTVSVKDVV
RILDGPCKGKQGPVEHIYKGVLFIYDRHHLEHAGFICAKSHSCVVVGGSRSNADRSGDSF
SRFANLRTPPRVPESPRRFPRGGRPMDSGGRHRGGRGHDSLIGSTIKIRQGPFKGYRGRV
VDVNGQSVRVELESQMKVVTVDRNQISDNVAVATPYRDAPRYGMGSETPMHPSRTPLHPY
MTPMRDVGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEEGNPDSWVTTSPQYQPGSPPS
RTYEAPTPGSGWASTPGGNYSEAGTPRDSTPAYANVPSPYLPSTPGGQPMTPNSVSYLPG
TPGGQPMTPGTGVDVMSPIGGEQEGPWFMPDILVHIRRPGEENTLGVIREVLPDGTYRVG
LGSSGGGEIVTVLHAEIDAVAPRKSDKIKIMGGAHRGATGKLIGVDGTDGIVKVDDTLDV
KILDMVLLAKLVQP
NT seq 3105 nt   +upstreamnt  +downstreamnt
atgcctcgccggagacacgacgacgacgacgatgatctggagcccgaggaagatgatgtt
ctcgacgacgacgaagattacgaggacgaggacgtcggagtcggttcaagtcgcaagagg
tcgagatctgagtttatagatgatgttgccgaggaggacgacgacgaggatgacgacgac
gacgatgaagattttggaggtagtcgtcgcggcagccaccgggccaagaggcggtctggc
tccgagtttctggaccttgaagctgcggtcgacagtgatgaggaagaggaggaggaagac
ggcgaggatgatttcattgttgatgctggagctgaattacccgatgaagatgatggtcag
aggatgcgtcgtcgccccttgctaccacaagaagacgagcaagaagattttgaggctcta
gagagaaagattcaggaaagatatggtaagtcaagtcatgcagaatatgatgaggagacc
acggaggtagaacagcaagctcttttgccatctgttagggatcctaagttgtggatggtg
aaatgtgcgattggtcatgagcgagaggcagctgtttgcctaatgcagaaatccatcgat
aaaggacctgaggtgcagatcaggtctgctattgccctagatcatctaaaaaactatata
tatattgaagctgacaaagaagctcatgtgaaggaggcatgcaaaggtctacgcaacata
tatgcccagaaagtaatgcttgttccgattagagaaatgactgatgtactttctgttgaa
agcaaagcagttgatctttctaggaatacttgggtcagaatgaagattgggacatataaa
ggagatctggcaaaagtagttgatgtggacaatgtgcgacagagagttactgtgcaacta
attccaagaattgacttgcaagctcttgcaaataagctggaaggtagagaagttgtgaca
aagaaggcctttaaacctcctccacgttttatgaatgttgaggaagctagagaaatgcat
atccgtgtagagcgtaggcgggatccgatgactggtgattatttcgagaatataggtggt
atgatgttcaaggatggtttcttgtataaaacagtgtccatgaaatcaattagtgttcag
aacatacagcccacatttgatgaacttgagaaatttcgaacacctggcgagactgaagat
ggtgatatggctagtttgtcaactttgtttgcaaatagaaagaaaggtcacttcatgaaa
ggtgatgcagttattatagtgaagggagatctaaaaaatttgaagggatgggttgagaag
gttgaggaagagaatgttcacatcagaccagaaatgaagggtcttccaaaaactcttgct
gtaaatgaaaaagagctatgcaagtactttgaaccagggaatcatgtgaaggttgtctct
ggcacacaggaaggtgcgactggtatggttgttaaggttgagggccatgtgctcatcatt
ttgtccgatacaaccaaggaacatcttcgtgtgtttgctgatgatgttgtggagagctca
gaggtaacttctggtgtcactagaattggggactatgagcttcatgatctcgtgctgctg
gacaatctgagcttcggtgtaattatacgtgttgaaagtgaagctttccaggttctaaag
ggagttccagatagacctgaagtggtgcttgtgaagctaagagagataaaattcaagatt
gataagagggtaaatgtccaagatcgatttaagaacacggtatctgtaaaagatgttgtt
agaattcttgacggaccttgcaaagggaaacaaggtccagttgaacatatatataaagga
gttctgttcatttatgatcgacatcaccttgagcatgctggttttatttgcgctaaatcc
cactcttgtgttgtcgtaggaggatcacgcagtaatgctgacagaagtggtgattccttc
tcaagatttgccaatctcagaacaccacctcgcgttcctgagtcaccaaggagattccct
cgaggaggtcgtccaatggactctggaggaaggcataggggtggaagaggacatgattca
ttgattggtagtacaataaaaattcgccagggaccttttaagggttaccgtgggcgtgtt
gttgatgttaatggtcaatctgttcgggttgaattggagtcccaaatgaaggttgttaca
gttgatcggaatcagatttctgataatgtggctgttgcaaccccataccgtgatgcacct
cgatatggtatgggaagtgaaacacccatgcatccttcacgaactccactgcatccatat
atgactcctatgagggatgttggagctactcctatacatgatggtatgagaacacccatg
cgggaccgcgcatggaatccttatgcaccaatgagtcctccaagggacaattgggaagaa
ggaaatcctgactcttgggtaaccaccagtccacagtatcagcctggaagccctccttca
cgaacatatgaagcacctactccaggttcaggctgggctagcactcctggtggcaattac
agtgaagctggaacaccgagggatagtacccctgcttatgcaaatgttcccagtccttac
ttgccttcaactcctggtggacaacctatgacaccaaattcagtatcttacctaccaggt
actcctggggggcagccaatgacgcctggaactggtgtggatgttatgtctccaataggc
ggagaacaagaagggccatggtttatgccagacatattggtccacatacgcaggcctgga
gaagagaacaccctaggagttatccgggaggtgcttccggatggtacttatagagtgggc
cttggatccagtggtgggggtgaaatagtaactgtcctgcatgctgaaattgatgctgtg
gcaccaagaaaatcagacaagatcaagattatgggtggtgcacatcgtggtgccactggc
aagctgattggtgttgatggcactgatggaatcgtaaaggtagatgatacccttgatgtt
aagatattggacatggttctcttggcaaaactagtacaaccatga

DBGET integrated database retrieval system