KEGG   Vitis vinifera (wine grape): 100267677
Entry
100267677         CDS       T01084                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    100267677
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vvi04121]
    100267677
   03036 Chromosome and associated proteins [BR:vvi03036]
    100267677
Enzymes [BR:vvi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100267677
Ubiquitin system [BR:vvi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100267677
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     100267677
    Noncanonical PRC1 (PRC1.1)
     100267677
    Noncanonical PRC1 (PRC1.3/1.5)
     100267677
    Noncanonical PRC1 (PRC1.6)
     100267677
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-rbx1 zf-Nse zf-RING_11 zf-C3HC4_5 zf-UDP zf-RING_10 zf-RING_6
Other DBs
NCBI-GeneID: 100267677
NCBI-ProteinID: XP_010657143
LinkDB
Position
12:complement(join(4103599..4103631,4103923..4104147,4104698..4104805,4104949..4105488,4106395..4106436,4106523..4106643,4106808..4106889,4107373..4107431,4110539..4110581,4110675..4110864))
AA seq 480 aa
MPAQKRSVSENLVSGGVDDDDEEERDEDSLHQHFHRKQPRHVEPDQVQPQDHHHQHPQLH
QEEDSDENPSSSTEEKPEFVFVGLPDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDK
SMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEQTRNKQI
QASIAQILQRQSEALNRKRTLGKDIAGPFMTRSQRNYRNAYSRRRKNGRGSDLQGSDDNE
DENDNDGGKGSSSAEERSTEVKRRRYKRRAGIRLIQPSSSSVANSDGGCIENDLEVNRES
RGFSPGLVWNPEMLAWGRGGARSHTRHGSSSGCNHKSARSTRLSKLVDYLRSLGENDNEL
DVHLMLISLDKESTPSLQEPYLCCRPTLSVRHLCEYVALQTPLRAEEVEILVVKGCHNDY
QPFPNPSTSVDDLNPDPIVIDPSKDELQILEGQETLVGLQANGTSCRNQLVLAYRQKGDS
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgcctgcccagaagcgttccgtctccgaaaatctggtcagcggcggagtcgacgacgac
gacgaggaggaaagagacgaagattctctccaccaacacttccatcggaagcagccgcgg
cacgtcgaaccagaccaagttcagccccaagatcaccaccaccaacacccacagctccac
caagaagaggattccgatgaaaacccttcctctagcactgaagaaaaaccagaatttgtc
tttgtaggactgccagacattcgtaaagatgtacaatgtccaatatgtcttgggatcatt
aagaaaacacgtactgtaatggaatgcttgcaccggttttgcagggaatgcattgacaaa
tcaatgagactggggaataatgagtgtcctgcttgccgcacacattgtgccagccgacgt
tccctgagagatgatccaaactatgatgccctaattgcagctttatatccagatattgat
aagtatgaagaggaggaactggcttttcatgaagaggagcagactcgcaataagcagatt
caagcatcaattgctcaaattcttcaaagacaatcagaagcgctaaataggaaacgcaca
ctgggtaaagatatagcaggtccatttatgacaagatcacagcgcaattatcggaatgct
tattcaaggaggaggaaaaatggtcgaggttctgatcttcaaggatctgatgataatgag
gatgagaatgataatgatggaggcaaaggttcatcttctgctgaggagcgttctacagaa
gtcaagcggagaaggtacaagagacgggcaggaattcgactcatacaaccttcttcttct
tcagtagctaactcagatggtggatgcattgaaaatgatttagaagtgaatagagaaagc
cgaggcttttctcctggactagtgtggaatcctgaaatgcttgcttggggcaggggtggt
gctcggagtcatacacgacatggcagtagcagtggctgcaatcataagagtgcccggagt
acccgcctgtccaagttggttgattatcttcggagcttaggggaaaatgataatgagtta
gatgttcatctcatgcttatttctttggataaagaaagtacaccaagtttgcaggagcca
tatctttgctgcaggccaaccttgtcagtgagacacctctgtgaatatgttgctctccag
acacctttgcgtgcggaagaagttgaaatattggtggtgaaagggtgtcacaatgactat
cagcccttcccaaacccttcaacctcagtagatgatctgaatcccgaccctatagtgatt
gatccatccaaagatgagctgcaaattttggaggggcaagaaactctggtggggcttcaa
gccaatggcacttcctgtagaaaccagttggtcctagcatatcggcagaagggggatagt
tag

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