Vitis vinifera (wine grape): 100267731
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Entry
100267731 CDS
T01084
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100267731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100267731
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
100267731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
A2L_zn_ribbon
Motif
Other DBs
NCBI-GeneID:
100267731
NCBI-ProteinID:
XP_059590067
LinkDB
All DBs
Position
2:complement(join(7182792..7184720,7185270..7185428,7187544..7188521))
Genome browser
AA seq
1021 aa
AA seq
DB search
MSLNSNLLVMRVLFDVVDWERRKLWRKSMDFSSPVAKRTRLQEALVYRRLYEEKKRNAGV
SSSGSHNDDGVEFLGEAGVFDSVQKFVAESDGKNSDRKNSSRKKNGGENSDEDVTDVVSI
SDDSEASDYEEEEDDDDDDYIVDPTIDRDERGNQASKLGKKKVELGTSSHPFCVDVDEGE
GDGDGEGEEEWEEEEEEEEEEEGRDSSSGHAEFPKTIGRKDKGELGKHTKRKRIRALKHC
DALKILVDSIWAKNSGLLEELVSPRGSDSIEETAPAFTELPLKFKFGVDESIPLGKSQPE
IGMNQLWAEFDFVLRSAEIGSKETNVDGEEDFGSAEVEIDQAVLCHQGNHQLVLDEQIGM
TCCFCSFVQLEIKYILPSFSRNPWGGSEKGNAGKEDCNSIFDELQFQKPGCGSQSGSDHG
LHPEGTVWDIIPGIRNSMYRHQCEGFEFIWKNVAGGIYLDELKRSSFSDGGSGCIISHAP
GTGKTRLTIVFLQTYMELYPACRPVIIAPRTMLLTWEEEFKKWNVDIPFHNLNKLEYSGK
ENITALNFLRRISHQGQSAKSIRMVKLYSWKKDRSILGISYTLFEKLAGERVLADQENKK
VKVQDYTKVQVRKILLELPGLLVLDEGHTPRNEQSLIWKALSKIDTERRIILSGTPFQNN
FKELYNTLCLVRPKFADRIAVEQYGGFRGKRGRKSNAARGKWDLLTSSIGKIADDKVEEL
RAMIEPFVHIHKGTILQENLPGLKDSVVVLQPSDLQRRLLESIREKKNPLELGYLVSLIS
VHPSLLPSDERKLFFDQTKLEKIKLNPDIGVKTKFLMAFIRFSETMNEKVLVFSQFLDPL
TYLMDQLKYHFHWIVGKEVLYMDGQRDVKQRQSSINTFNDPASQVRVLLASTKACSEGIS
LVGASRVILLDVVWNPSVERQAISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKDRL
SELVFSSKDKTSAGNKISSTVSEDKILEEMVQHNKLKDMFDKIINQPKESNLIETFGLVD
I
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgaattcgaatttgttggtgatgcgtgtattgtttgatgttgtagactgggaa
agacggaaactttggcggaagagtatggatttctcttcgccggtagcgaaaaggacgcgg
cttcaggaagccctagtctacaggaggttgtatgaggagaagaagaggaatgcgggtgtg
tcgagtagtgggagtcacaatgacgatggtgttgagtttttgggtgaggcgggggttttt
gattctgtacagaaatttgttgctgagtcagatgggaagaatagtgatagaaagaatagt
agtaggaagaagaatggcggggaaaacagtgacgaggatgttactgatgtagtttccatt
tcagatgactcagaggcctctgactacgaggaggaggaggatgatgatgatgatgactat
atagtggatcctaccattgacagagacgaaagaggaaatcaagcttcaaaattagggaaa
aagaaagtggaacttggaacttccagtcatccattttgtgttgatgttgatgagggtgag
ggtgatggtgatggggagggcgaggaggaatgggaggaagaggaggaagaagaggaggag
gaggaggggcgtgattcctcatctgggcatgctgaattcccaaaaactattggtagaaaa
gataaaggggagttagggaaacacaccaagagaaagcgaatccgtgcactgaaacattgc
gatgctttgaagattcttgtggattccatttgggcaaagaatagcgggcttctggaagaa
ctggtttctcctagaggcagtgattcgatcgaagagacagcgcctgcttttacggagctt
ccgttaaaattcaagtttggagtggatgagtcaattccattggggaagtcccaacccgag
ataggaatgaatcaactttgggctgagtttgattttgttcttagatcggctgaaatcggc
tccaaggaaactaatgtggatggcgaagaggactttggatctgcagaggttgaaattgat
caagctgtcctttgtcatcaagggaatcatcagcttgttcttgatgaacaaattggaatg
acatgctgtttttgttcttttgttcaactggagatcaagtacatcttaccatcgtttagt
agaaatccttggggcggatcagagaaggggaatgcaggaaaagaggactgtaactccatt
tttgatgagcttcagttccagaaacctggttgtggttctcagtctggttctgatcatggc
cttcatcctgaaggcacggtttgggacattattcctggtattagaaatagtatgtacaga
catcaatgtgaaggttttgaattcatttggaagaatgtggctggaggcatttaccttgat
gagttgaaaagatcatccttttctgatggtggtagtggctgcattatatcgcatgctcct
ggtacaggaaagacccgtttaaccatagtctttctccagacatacatggagctttatcct
gcatgcaggccagtcatcattgctcctcgcaccatgctccttacatgggaagaagaattc
aagaaatggaatgttgatattccatttcataatctgaacaagctagagtactctggaaag
gaaaatataactgctttgaattttctgaggaggattagccatcagggacaaagtgcaaaa
tctattcgtatggtaaagttgtattcatggaaaaaggatcgaagcatcctggggatcagc
tacacactatttgaaaaacttgccggagaacgagttcttgctgaccaagaaaataagaaa
gttaaagtacaggattacactaaagtgcaggtaagaaaaatcctccttgagcttcctggt
cttttagtgcttgatgaggggcacacacctcgcaatgaacaaagtcttatctggaaggct
ttgtcaaaaattgacacagaaaggcgcatcatcctctcaggaactcctttccagaataat
tttaaggagctttataatacactctgcttggtgagaccaaagtttgctgacaggatcgct
gttgaacagtatggaggctttcgtggtaagcgtgggaggaaaagcaatgcagcaagaggg
aaatgggatttattgaccagttccattggcaaaattgccgatgataaagtagaggaacta
agagccatgatcgaaccctttgttcatatacacaaaggcacaatacttcaagaaaatctt
ccagggttgaaggactctgttgttgttttacaaccatctgatttgcagaggaggctcctt
gaaagcattcgagaaaaaaagaacccacttgaactggggtatttagtgtccttgatatct
gtacatccctcgctgttgccctctgatgaaagaaaactgttttttgaccagactaagtta
gaaaagattaaattgaatcctgatattggtgtgaaaacaaaattcctgatggcatttatc
aggtttagtgagaccatgaatgagaaggttttggtcttcagtcaatttttagatccgttg
acctatttaatggaccaacttaaatatcatttccattggattgtgggaaaggaggtgttg
tacatggatggacagcgtgatgtaaagcagcgccagtcctcaattaatactttcaacgat
ccagccagtcaagtaagggtattacttgcatcaacaaaggcttgctctgaagggatcagc
ctggttggtgcttctagggtcattttgcttgatgttgtttggaatccatcagtggaaaga
caagctataagcagggcatacaggcttgggcagagaaaagtggtgtacatataccatctg
cttacatcagggacaatggaagaggagaagtactgtcgacaggctaagaaagaccgacta
tctgagttggtgttttcttctaaggacaagactagtgctgggaacaaaatttcatccaca
gtttcagaagataaaattttggaagagatggtccagcacaacaagttgaaagatatgttt
gataagataataaaccaaccaaaagaatcaaatttaattgaaacttttggtttggtggat
atctag
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