KEGG T01084: 100267801

Vitis vinifera (wine grape): 100267801

Entry

100267801         CDS       T01084

Name

(RefSeq) carbon catabolite repressor protein 4 homolog 1 isoform X1

K12603

CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]

Organism

vvi Vitis vinifera (wine grape)

Pathway

vvi03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100267801
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100267801
Enzymes [BR:vvi01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     100267801
Messenger RNA biogenesis [BR:vvi03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100267801
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100267801

SSDB

Motif

Pfam:

Exo_endo_phos zf-C6H2 zf-MYND COBRA

Other DBs

NCBI-GeneID:

100267801

NCBI-ProteinID:

XP_010664322

UniProt:

A0ABY9DT33

LinkDB

Position

18:complement(join(4377729..4377922,4379242..4379383,4379818..4379929,4380359..4380447,4380532..4380585,4380672..4380752,4380845..4380928,4381005..4381088,4383034..4383120,4383250..4383949,4385313..4385464))

AA seq 592 aa
MGLQESESLTCKVNVTLPYTTPVVGLKFKPAVRVLGITSLPAPQHNKKFSWYREKITCSV
HHLQLATIQCMSCVALDMPVRESYYCSKQCFLDLWPQHKARHCLAAESVSKASNDCYSLM
GRLRSSGSWTDFGIDSIFVESETLVEREGKTWIKVGSSETYVPSMDDFGFCLMFESLAID
CSLGFPLSEIKSIMTDPVIIPPHPCPRHMIQIQHLKEPRNIVFESQSSNADTFSVLSYNI
LSDIYASRSAHVKCPGWALAWEYRRKNLLLEITGYDADIICLQEVQSDHLENYFKPKLTK
RGYSVTYKKKALQVYTANQFISDGCATFFRHDRFKEITKYELEFDKTALSVVEGLEPGQR
TEGQIRLMKGNIALVIILERVENGSSLGAFQPRICVANTHIYANPNLPDVKLCQVASLVN
GLEKIAQSQIPILICGDMNSLPGSDPHKFLVTGRICPVSSKETADPLGIYNLLKLQHSIP
LVSAYSSLLCSGRVKEDEKKKMNQETKEPVFTNLSGGNSSTLDYIFHTENNLEVEGLLEL
LNSETVGEALPSPLWSSDHIALMANFRFKQAFCWEPHSPPPQNPWHQAAPLS

NT seq 1779 nt +upstreamnt +downstreamnt
atgggtttgcaagaatccgaaagcctcacatgtaaagtgaatgtgacccttccctacact
actccggtcgtcggcctcaagttcaaacccgcggttcgagttttgggcataacctccctt
ccagctccccagcataacaaaaaattcagttggtaccgggaaaagattacttgttctgtg
caccatcttcagcttgctaccatccagtgtatgtcttgtgtggcattagatatgcctgtc
agagaaagttactattgctctaagcagtgcttcttagatttatggccgcaacacaaggca
cgtcattgtcttgctgctgaaagtgtcagtaaggcttcaaatgattgttacagtttgatg
ggaaggctgagaagtagtggctcttggactgactttggaattgactcaatatttgttgag
agtgaaacactggtggaacgagaagggaaaacatggattaaggtgggctcatcagaaact
tatgtgccctcaatggatgattttggcttctgtttgatgtttgaatctttagcaatagat
tgttcacttggatttcccttgtctgaaataaagagcatcatgactgatccggtaatcatt
cctccccacccttgccctcgtcatatgatccaaattcaacacctgaaggaacctaggaac
atcgtttttgagtctcaatcttctaatgctgatacttttagtgtgctatcctataacatc
ctttccgacatttatgctagtaggagtgcacacgtaaaatgtcctggatgggctcttgca
tgggagtatcgtcggaaaaatttgctccttgagattactggatatgatgcagatatcatc
tgtctccaggaggtacaaagtgatcatttggagaattactttaaacccaagctaacaaaa
cgtggctactcagttacttacaagaaaaaagccttgcaggtgtacacagctaatcaattt
ataagtgatgggtgtgctacatttttccgacacgaccgattcaaagaaataacaaaatat
gagcttgagtttgataaaacagcattgtcagtggttgaaggattggaaccaggccaaagg
actgagggccaaattcgtttgatgaagggtaatattgcacttgttataatattagaaaga
gtggaaaatggcagctctcttggtgcttttcagcctagaatttgtgtggcaaacactcat
atatatgccaacccaaaccttccagatgtaaaactatgccaggttgcaagtcttgttaat
ggactagagaaaattgctcaatcacaaattcctattttaatttgtggggatatgaactct
cttcctggaagtgatcctcataagtttctagtcactggtagaatttgtcctgtcagtagc
aaggagacagctgatccattgggtatatataatcttctcaagcttcaacactcgattcct
ctggtaagtgcctattcatctttactttgttcggggagagtgaaggaagatgaaaagaag
aagatgaaccaggagacaaaagagcctgtattcaccaatctttctggaggaaactcatca
actttggattatatttttcacacagagaataatttggaggttgaaggtcttttggagctt
ctcaactccgaaactgtaggtgaagctcttccatcacctttatggtcatctgatcatatt
gccctcatggcaaatttcagatttaagcaagctttctgctgggagccgcactcaccacct
cctcaaaatccatggcaccaagctgcgcctctgtcatag

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