Vitis vinifera (wine grape): 100267869
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Entry
100267869 CDS
T01084
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100267869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100267869
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100267869
mRNA degradation factors
5'-3' decay
Decapping complex
100267869
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100267869
NCBI-ProteinID:
XP_010645006
UniProt:
A0ABY9E1I0
LinkDB
All DBs
Position
19:complement(join(22652032..22654175,22658669..22658732,22659768..22659824,22669797..22669927,22671026..22671116))
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AA seq
828 aa
AA seq
DB search
MEDGVFEGGGAGIHEASNHPDLNQFGDTSTVFDASQYAFFGKDVVEEVELGGLEDEDLPV
AGFDEEEFLLDREEGEVLRSLSDIDDLASTFSKLETGVSGPRNAGIIGDRGSRESSSAAE
WAQEEDLHYWFDQHMFETESLQDGKRWSSQPHASSAHLSELKPLYRTSSYPEQQQPQQLQ
QHQQQQHHYSSEPILVPKSSFTSYPPTGGRSLEGSPNHHSRHISHLSGGPQIALSPSNLP
PFSNPQLQLPSLHHGSQFGGNLPQFAPGLSVNSRPPSQWVNQTNIFPGDHPSILNNLLQQ
QLPHQNGLMPPQLMLQQQPQQHRLHHPVQPSFGHLSGLQSQLFNPHLSPAPPIMNKYEAM
LGIGDLRDQRPKSMQKGRPNHRFSQQGFDTSSQKSDVGWPQFRSKYMTADEIESILRMQL
AATHSNDPYVDDYYHQACLAKKSAGARLKHHFCPTHLRELPPRARANSEPHAFLQVDALG
RVPFSSIRRPRPLLEVDPPNSSVAGSTEQKVSEKPLEQEPMLAARVTIEDGLCLLLDVDD
IDRFLQFNQLQDGGTQLRRRRQNLLEGLAASLQLVDPLGKPGHTVGLAPKDDLVFLRLVS
LPKGRKLLSKYLQLLFPAVELIRIVCMAIFRHLRFLFGGLPSDSGAAETTTNLSRVVSSC
VRGMDLGALSACFAAVVCSSEQPPLRPLGSSAGDGASVILKSVLERATEILTDPHVAGNC
NMNNRALWQASFDEFFGLLTKYCLNKYDSIMQSLLMQASSNMTAVGADAARAISREMPVE
LLRASLPHTNEHQKKLLLDFAHRSMPVMGFNSQGGGSGSHVNSESVLS
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggtgtgtttgagggtggtggggctggtattcatgaggcttccaatcatccg
gatctcaaccaatttggagatacttccacagtatttgatgcttcacagtatgcatttttt
ggtaaagacgtcgttgaggaagttgagttgggtggattagaagatgaagatttgcctgta
gctgggtttgatgaagaggagttcctgttagacagggaggagggtgaagttctaaggtct
ttatctgatattgatgatcttgctagtactttttcaaagttggaaacaggtgttagtgga
ccaagaaatgcaggaattattggtgataggggatccagagaaagttcttcagctgctgaa
tgggcacaggaagaggatctacattactggtttgatcaacatatgtttgagactgaaagc
cttcaggatggcaaaagatggtcatcacagccccatgcttcttctgcccatctctcagaa
ttgaagcctctgtacagaacttcatcatatcctgaacagcagcagccacagcagctccag
cagcatcagcagcagcagcatcactactctagcgaaccaattctagtgccaaaatcttct
tttacttcttatcctcccacagggggcagatccctggagggttcaccaaatcatcattca
cgccacatctctcatctttccggcggaccccagattgcattatctccatcaaacctccct
cccttttccaaccctcagcttcaattgcccagcttgcatcatgggtcccaatttggtgga
aatttacctcagtttgctcctggtctctctgttaatagccgaccaccaagccaatgggtc
aaccaaaccaacatatttcctggagatcatcccagtatcttgaacaatttgttacaacaa
caattacctcatcaaaatgggctaatgcctccacagttaatgctgcaacagcagccacag
cagcatagactgcatcatccagttcagccttcatttggtcatttatcagggctgcagtcc
caactatttaatccccatctttccccagctccacccatcatgaacaaatatgaagcaatg
cttgggataggtgatctgagggatcaaagacccaagtcaatgcaaaaaggtagaccgaat
catcggttttctcaacagggctttgatactagcagtcagaagagtgatgttgggtggcca
cagttcagatccaagtatatgacagctgatgaaatcgaaagtatccttagaatgcagctt
gctgcaacacacagtaatgatccatatgtggatgattattaccatcaggcttgtcttgca
aaaaaatctgctggagcaagattgaagcaccatttctgcccaactcacctgagggaactc
cctccccgagcccgtgcaaacagtgagccacatgcttttctccaggttgatgctcttgga
agggttccattctcatccatccgcagaccccgtcctcttcttgaagttgaccctccaaat
tcatctgttgctggcagcactgaacagaaagtttctgagaagcctctggaacaggaaccg
atgcttgcagcaagagtcactattgaggatggtctttgtcttctccttgatgtggatgac
atagatcggtttttacaattcaatcagctccaggatggtgggactcagttgaggcggaga
cggcagaacctgctggaagggctcgcagcatcacttcagttggttgacccacttgggaaa
cctggtcacaccgttgggctggctcccaaggatgatcttgtgttcctacggttagtttca
cttcccaaaggtaggaagcttctctcaaagtatctccagctactctttccagccgttgag
ctcatccgaatagtctgcatggccattttccgccatttaaggtttttatttgggggccta
ccctctgattctggagcggctgaaacgaccactaacctctcaagggtcgtttcctcatgt
gttcgtggaatggatctcggtgctctaagtgcttgttttgcagcagtggtttgttcatca
gagcagcctccccttcgtcctcttggaagctctgctggtgatggagcttctgtaatacta
aaatctgtgcttgaacgggcaactgaaattttaaccgatcctcatgttgctggcaactgc
aatatgaataatcgagccctgtggcaggcctcttttgacgaattctttggccttcttacc
aagtactgcttgaacaaatatgatagtataatgcagtcattgctcatgcaggcctcttca
aacatgacagctgtgggggcagatgcagctagagccatcagtagagagatgccagtcgag
ctcttgcgtgcaagtcttccacataccaatgagcaccagaaaaagctgttactggatttt
gcacaccgctccatgcctgtaatgggatttaatagtcagggtggcggcagtggcagtcat
gtgaattctgaatctgttctgagttga
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