KEGG   Vitis vinifera (wine grape): 100268003
Entry
100268003         CDS       T01084                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03013  Nucleocytoplasmic transport
vvi03015  mRNA surveillance pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100268003
  09122 Translation
   03013 Nucleocytoplasmic transport
    100268003
   03015 mRNA surveillance pathway
    100268003
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100268003
   03041 Spliceosome [BR:vvi03041]
    100268003
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100268003
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100268003
Spliceosome [BR:vvi03041]
 Complex C
  Other components
   EJC/TREX
    100268003
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100268003
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1 YihI
Other DBs
NCBI-GeneID: 100268003
NCBI-ProteinID: XP_002268833
UniProt: D7U112
LinkDB
Position
9:complement(join(6547086..6547096,6547975..6548038,6548141..6548224,6548331..6548475,6558141..6558325,6558414..6558470,6562034..6562152,6562273..6562504,6562634..6562806,6563971..6564071,6565409..6565524))
AA seq 428 aa
MGEARDNDAYEEELLDYEEEDEKAPDSVASKAAGESAKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIVVGTPGRILA
LARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggagaagcaagggacaatgatgcatacgaggaagagcttctcgactacgaagaagaa
gatgaaaaagcccccgactccgttgcttccaaagccgcaggcgaatccgccaagaagggc
tatgttggaattcacagttcaggattcagagacttcttgttaaagccagagcttctacga
tcaattgtagattcaggatttgagcatccttcagaagtgcaacatgagtgcatccctcaa
gctatcttaggaatggatgtcatctgtcaagcgaaatctgggatgggaaaaacagctgtc
tttgttctctcaactctgcagcaaattgagcctgttgcaggacaagttgctgcactagtt
ctttgtcatactagagaattagcttaccagatctgtcatgaattcgagagattcagcacc
tatttgcctgatattaaggtggctgtcttctatggtggtgtcagtatcaagactcacaag
gatttgctgaaaaatgaatgtccccatattgttgttggaacacctgggagaatattggct
cttgcaagggataaagaccttgggttaaaacacgtgaggcattttatccttgatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggagatcttcaagatgaca
cctcatgataagcaagttatgatgttttcagctacactcagcaaagagattcggcctgtt
tgcaagaagtttatgcaggatccaatggaaatttatgtggatgatgaggccaaattgaca
ctccatggtcttgtccagcactatattaaattgagtgagctggagaagaaccggaagctg
aatgacctccttgatgccttggacttcaaccaagttgtcatttttgttaaaagtgtgagc
agagcagcagagctgaacaagttgctgatggagtgcaatttcccttctatctgcattcat
tctgggatgcctcaggaagaaaggttaacacgctacaagaatttcaaggaggggcacaaa
agaatccttgtggcaacagatttagttggcagaggaattgatattgagcgagttaacatt
gttataaactatgacatgccggactctgctgacacctaccttcacagggttggtagggct
ggtaggtttggaaccaaagggcttgcaataacatttgtctcatctgcatccgactctgat
gttcttaatcaggttcaggagaggtttgaggtggatataaaggaacttcctgagcaaatt
gatacttcaacatacatgccatcatga

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