KEGG T01084: 100852980

Vitis vinifera (wine grape): 100852980

Entry

100852980         CDS       T01084

Name

(RefSeq) uncharacterized protein LOC100852980 isoform X1

K10756

replication factor C subunit 3/5

Organism

vvi Vitis vinifera (wine grape)

Pathway

vvi03030

DNA replication

vvi03410

Base excision repair

vvi03420

Nucleotide excision repair

vvi03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100852980
   03410 Base excision repair
    100852980
   03420 Nucleotide excision repair
    100852980
   03430 Mismatch repair
    100852980
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100852980
   03036 Chromosome and associated proteins [BR:vvi03036]
    100852980
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100852980
DNA replication proteins [BR:vvi03032]
Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100852980
  DNA Replication Termination Factors
   ELG1-RFC complex
    100852980
Chromosome and associated proteins [BR:vvi03036]
Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    100852980
DNA repair and recombination proteins [BR:vvi03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100852980
  Check point factors
   HRAD17(Rad24)-RFC complex
    100852980

SSDB

Motif

Pfam:

RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rad17 TIP49

Other DBs

NCBI-GeneID:

100852980

NCBI-ProteinID:

XP_010649124

LinkDB

Position

4:join(19999896..20001239,20001401..20001511,20001615..20001647,20002843..20003020,20003110..20003291,20003847..20003983,20004067..20004162,20004811..20004880,20004969..20005043,20005119..20005164,20005889..20005950)

AA seq 777 aa
MENSTRYGRTSLPHFPPSKSRRSGYEPSDTETDWQDSPWRDRNETNGPLRSELPRTPFDP
LPKISPMIPSRRHSSKIEYDASSSTKASGTSPTRRRHSKSPYKPHKGEAGSNIRRNVSPL
SKSERWRNISPYKLAKEHNAILEIETMSSNRKQNHRMHDKHTSSEVKGADSQLAEVSRTS
ERPNSSHRSASAPRTKAAEKDRQINYGRLEQRSERTPSPLAKSTARKQIESSPKKGPSVS
EINVMVATERLARGGVRDFSKFDSTDSNLPGDIFFSHDYTALALQKNVLQKNNVFESRFP
SNPNPNTITKRNLATNQRSRGNDIFYQNTQGNLSSTVLSGTAPSSAVSRESSGRVSTESS
KMSDASGSLKKFTANRRKSHSDAWFACMRKGPCKTRKSPEKRDVDETSFIQKALVVENLR
QFWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYG
DASWNISHELRSFHVQEKRPMQVVVPLTSSAHHVELNVNLEPYARHALMAIVKQIRSNCE
ITPEVSNVDFKADYKVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCEDDVDVLESV
KNRCKVIKLEAPVTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAIMALEACKA
HNYPFLDDQPIPLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVDFVHPKLILQKLV
EQFLKGTDASQKRDLYYWHAYYDKRLPAGTSALLKLEEFVAKFMSIRRKSLGNRQYT

NT seq 2334 nt +upstreamnt +downstreamnt
atggagaattccaccagatacggcagaacctctctgcctcatttcccaccttccaagtca
aggcggagcggttacgaaccttctgatacggagactgactggcaggatagtccgtggcgt
gaccgcaatgaaactaacggacctttgcgcagtgaactgcccagaactcctttcgacccg
ttgccaaagatcagtcccatgatacccagccggagacactcctccaagattgaatatgat
gcctcttcttctaccaaggcttccggaactagcccaactagaaggaggcacagtaagtcg
ccatacaagccacacaaaggtgaagcgggttccaatattcgtaggaatgttagtcctcta
tcgaaatctgagcgttggagaaatatttctccatataaacttgcaaaagagcacaatgca
attttggaaattgagactatgagttcgaatagaaagcaaaatcacagaatgcatgataag
catacgagttccgaggtgaagggagctgattcacagcttgctgaagttagtagaacgagt
gagaggccaaactccagtcatagatcagcatctgccccaagaacaaaagcagcagagaag
gacagacagatcaactatggccgtctggagcaaagaagtgaaagaaccccctcaccgttg
gcaaagagcacggctcggaaacagattgaatcttcccccaagaaaggtccctcagtcagc
gaaatcaacgtaatggtggctactgaaaggctcgccagaggaggagtccgtgatttttcg
aagttcgacagcacggactccaatttacctggggatatctttttctcccatgattacaca
gccttggctttgcagaagaatgtattgcaaaaaaacaatgtttttgaaagcagatttccc
tcaaacccaaatcccaatacaatcaccaaaagaaatttggccactaatcaaagaagcaga
ggcaatgatattttttatcagaacactcaagggaatttgtccagtactgttctatcagga
acagctcccagctctgctgtaagcagagagagtagtggtagagtcagcacggagagtagt
aagatgagtgatgctagtgggagcttgaaaaaatttacagccaacagaagaaagagccat
tcagatgcctggtttgcttgcatgaggaaggggccttgcaaaaccagaaaatcacctgaa
aagagagacgttgatgaaacatcatttattcagaaggcacttgtggtggaaaacctgaga
caattttgggctgataagcatcggcctgcttccttgaatggtttcacgttgcacaaacaa
gaagctcaacttctcaagcaactcgtatctagtgatatctgtccacatgttcttttcaaa
ggaccttctggttcagggaagaaagcactaactatggctcttttgcgtgaaatatatggt
gatgcatcttggaatatttctcatgagttaagatctttccatgttcaggaaaaaaggccc
atgcaagtagtggtacctttaacatccagtgctcatcatgtggagcttaatgttaacttg
gaaccatatgctagacatgcattgatggctatagtgaaacaaatcagaagcaattgtgaa
atcacccccgaagtcagcaatgttgatttcaaggcagattataaagtattagttctctat
gaggttgacaaagcagcagagaatattcagtacttgataaaatggatcatggactgctac
acagatgcttgtcaactcataatgtgctgtgaagatgatgtagatgtccttgaatcagtg
aaaaaccggtgcaaagttattaagcttgaggctcctgtaactcacgaaattatggaggtt
cttattcagatagcaaggaaggaggactttgacctacccatgagctttgctgctaagatt
gccacaaaatcaaagcaggacctgaggaaagcaatcatggctcttgaagcgtgcaaagca
cacaactatcctttccttgatgaccaaccaattccacttggatgggaagaggtcctggta
gaactagctgctgaagtcttagttgatccatcacctaacagattgttttatttacgggga
aaaattcaaaagcttcttgtggattttgttcaccccaaactgattcttcagaagcttgtt
gaacaatttcttaaagggactgatgctagtcaaaagagggacctttattattggcatgct
tattatgataagagacttccagcaggaacaagtgctttactgaaattagaagaatttgtg
gccaagttcatgagcatacgcaggaagagtttgggcaaccgtcagtacacataa

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