Vitis vinifera (wine grape): 100855072
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Entry
100855072 CDS
T01084
Name
(RefSeq) uncharacterized protein LOC100855072 isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100855072
Enzymes [BR:
vvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100855072
5.6.2.5 RNA 5'-3' helicase
100855072
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100855072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
DUF6469
AAA_11
AAA_19
UvrD-helicase
AAA_30
AAA_22
Viral_helicase1
AAA_16
UvrD_C
AAA
nSTAND3
DEAD
Helicase_RecD
Flavi_DEAD
ResIII
AAA_7
FtsK_SpoIIIE
RuvB_N
Rad17
MtaB
Motif
Other DBs
NCBI-GeneID:
100855072
NCBI-ProteinID:
XP_003631316
LinkDB
All DBs
Position
1:complement(join(23162150..23162305,23162683..23163856,23164101..23164637,23164756..23165111,23165266..23165482,23165574..23165832,23166672..23166999,23167156..23168331,23168418..23168966,23172368..23172472))
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AA seq
1618 aa
AA seq
DB search
MERETRAVPKVSGLTQRLFSWSLEDIQNEDLYKTQVEKIPGTFQSAEHYFASFVYPLLEE
TRAQLSLGLELISRAPFAEVICIDKVEPDEELLYNVRVDYWRNRSAGRCLDPYRTVPGDL
VIFADAKLETFSDIQCLGRKTWAFALVTEVRENEIEDDGTTVCFKVRVSKERTEGDGKNK
WTFMYFLINITTGERIWNALHMSGNLNIIKQVLFTDSTVKESCELCPESSRGVRTETFGT
ILSSKLNKSQMAAVLASLRKIHCNHKSSVELICGPPGTGKTRTISALLCALLGTNIRTLT
CAPTAVAVKEVASRVMKHLKESFETDPQKDASICSLGDLLFFGDYDSTAVGSEMKEIYLD
HRVERLAKCFEPLNGWRHSFNSMIVFLEGGVSEDRVSEDELSKMEEGSIDGSKGKRKTYL
QLAREQFKSTSLHLREVVITLSTHIPKSFIMEHNFQAMLSLLGFLRSFESLLHQDNMVSE
ELENLFAGKKNVKHSSKSVADSSTLMEIRSECLHILKNLRNSLDELQFPKNNSKDLLIDF
CFQTASSIFSTASDSHKLHLVDMKPLNILVIDEAAQLRECESTIPLQLPGIKLAILIGDK
FQLPSRVTSNICDRAGFGRSLYERLSSLDHAKHFLNLQYRMHPSISLFPCSNFYANQILD
APNVKHKAYEKKYLPDPVFRPYLFINISCGREEVDEVGHSVKNMVEVAVLMKIVQNLYQD
WRSGIKEELRIGVLSSYTAQVLEIQERFRQKYENNDRFSVKVQTIDGFQGGEEDIILIST
VRANNFGSVGVMADVKITNVALTRARHGLWILGSERTLVMSETVWKDIVHDAKDRHCLLN
ADEDCDLANTIFKVKTELDELDDLLNKDSSLFNSARWKVIFSENFRKAFYNLKSSHTQNT
VIALLLKLSTGWRPKRRNIDLPCESSSMILKKFKVGYLYIVCSNDLEKECGYYTQVLKVW
DILALEDIPKLVKHLDSLFEMYTDDYLTRCKKKSWEGELEIPMSWTTSYDIVQYKSLSNN
ATGRISNVSGLARRGGFENSIVSESFLIMKFYSVTFNMVRHFISGHDGRELDLPFELTDQ
ERETIFFNRSSFILGRSGTGKTTVLGMKLFQKEQLFHIASEGLYEVEGHSSTHASQRNEI
GECTGDAKGACLHQLFVTVSPRLCNAIRRQLSHFQSFASGGKFLVESSSLDLDYIDPVQF
KDIPDSFVNIPSKSYPLVITFHKFLMMLDGTVGISYFSRFPDAHKPSRTVTLQSFIRSRE
VNYERFISSYWPYFKSHLIKYLDSSAVFTEIISHIKGGLEAGKAHDGRLSREDYLLLSEA
RVSTLTREQRDRVYDIFLEYEKKKFKKGEYDLSDLVMDLHFRLRNERYEGDHIDFVYIDE
VQDLTMRQIALFKYVSKNIDEGFVFSGDTAQTIAKGVHFRFQDIRHLFFKEFVLGSRTDA
TDEKKEKGKLSKIFHLSQNFRTHAGVLNLAQSIIDLLYHFFPLTIDELNPETSLINGEAP
VLIECGNFKDALSTIFGDSENAKGNAGFGAEQVILVRNDSAKEEISKYVGKKALVLTILE
CKGLEFRDVLLCNFFGSCPFKHWRVLYQFMNRLIWLILNPLYLFQVLMRQNTMSCALS
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atggagagggagacgagagcagttcccaaagtctctgggttgacccagcggctgttttct
tggtcccttgaagacattcagaatgaagatctttacaagacccaggtggaaaagattcct
ggtacatttcaatcagcagagcattattttgcatcatttgtataccctttactggaagaa
acaagggctcaactctctttaggtttggagctgatttccagggcacctttcgctgaagtt
atctgtattgacaaggttgaaccagatgaagaattactatacaatgtcagggttgattac
tggagaaacaggtccgctggccgttgtctggacccttatagaacagtgcctggagatctt
gttatttttgcagatgctaaacttgaaactttttctgatatacaatgcttggggaggaag
acatgggcttttgcattggtcactgaagtcagagagaatgagattgaggatgatggtaca
actgtttgttttaaagtccgagtatcaaaagagagaacagaaggagatgggaagaacaaa
tggaccttcatgtatttcctaattaatataacaactggtgaaagaatttggaatgcacta
cacatgtctgggaatctgaatattatcaaacaagttttgttcactgattcaacggttaaa
gaaagttgtgaactctgtccagagagcagtagaggagtacgcactgaaacttttggcaca
atcctatcgtctaagctgaataagtctcaaatggctgcggttttggcttcacttcgtaaa
attcactgcaaccacaagtcatctgtggaacttatctgtggcccaccaggaacagggaag
actagaactattagtgcattgctatgtgctctcttgggaacaaacataaggactcttact
tgtgctccaactgctgttgcagttaaggaggtggcatctcgggttatgaagcatttgaaa
gagtcatttgaaacagaccctcagaaggatgcttcgatttgttccttgggagatcttctc
ttctttggtgactatgactccactgcagttggttcagagatgaaagagatatatttggat
catcgtgtagaaagactggcaaagtgctttgagccactaaatggttggaggcattctttc
aactcaatgatagttttccttgaaggtggtgtttctgaggaccgtgtctctgaagatgaa
ttgtctaaaatggaggaaggcagcattgatggtagcaagggaaagagaaaaacatatctt
cagttggcaagagagcagttcaaatctacatctttgcatctcagggaagttgtcattacc
ctctctacccatatacccaaaagctttattatggaacacaacttccaagcaatgttatct
cttctaggcttcctccgttcttttgaatctttgttgcatcaagacaatatggtttctgaa
gaactagaaaacctgtttgcagggaaaaaaaatgtgaagcattcttctaagtctgttgcg
gattcatcaaccttgatggaaatcagaagcgaatgccttcacattctaaaaaatcttcgg
aattcgcttgatgagcttcaatttccaaagaataacagcaaagatttgttaatagatttc
tgttttcaaacagcttcttctattttctccactgcttctgattcgcataaactacatttg
gtggatatgaagccattaaacattttggttattgatgaagctgcacagttaagagagtgt
gagtcaaccattccactccaacttcctggtataaagcttgctattctgattggggataag
ttccaattaccctcaagagtgacaagcaatatttgtgatagagctggcttcgggagaagc
ttatatgaaagattgagttcactggatcatgcaaagcacttcctcaatctgcagtaccga
atgcatccatcaatcagtttgtttccatgctcaaatttttatgcaaatcaaatattggat
gctccaaatgttaagcataaagcctatgaaaaaaaatatcttcccgacccagtttttaga
ccatatttattcataaatatttcttgtgggagggaggaagtggatgaggttggacatagt
gtgaaaaatatggttgaggtggctgttttgatgaagatagtacagaatctataccaagat
tggaggagtggaataaaggaggagcttagaattggtgtactatcctcatatactgctcaa
gtacttgaaattcaagaaagattcagacagaagtatgagaacaacgataggttttcagta
aaggtacagacaattgatgggtttcagggtggagaagaagatataatactgatatcaact
gtacgagctaataattttggatcagttggggttatggccgatgttaaaataactaatgtt
gctttaacaagagctagacatggtctttggattttggggagtgaaaggaccctagttatg
agtgaaacagtgtggaaagatattgttcatgatgctaaggatcgacattgtcttttgaat
gctgatgaagattgtgatttggccaatactatatttaaggtcaagacagagcttgatgaa
ctggatgatttacttaataaggatagttcactgttcaacagtgctagatggaaggttatt
ttcagtgaaaattttagaaaagcgttctataacttgaagtcatctcatactcagaatacg
gtcatcgccttattactaaaactgtcaactggctggcgacctaaaaggaggaatatagat
ttgccttgtgaaagttcttccatgattttgaaaaaattcaaggtgggatatctgtacatt
gtttgctcaaatgatcttgagaaggaatgtggctactatacccaggttcttaaagtttgg
gatatattagcattggaggatattccgaagctggttaaacaccttgacagcctatttgaa
atgtacactgatgattatctcactcgttgcaagaagaaatcttgggagggggaattggaa
attccaatgagttggacaacttcatatgatattgttcaatacaagagtcttagcaataat
gcaactggtagaatttcaaatgttagtggtctggccagaagaggtggttttgagaactca
attgtgagtgagagctttttaattatgaaattttactccgtgacatttaatatggtgcga
cactttatttctggccatgatggtagagaactggatcttccctttgaattaactgaccaa
gaacgggagaccattttcttcaatagaagcagttttatacttggaaggtctggcaccggg
aaaactacagttttgggcatgaagctattccagaaagagcaattgtttcatattgcttca
gagggattatatgaagttgagggccattcgtctacgcatgctagtcagagaaatgaaatt
ggtgaatgcactggcgatgcaaagggagcatgcttgcaccaactttttgttacggttagt
ccgagactgtgtaatgccattagacgacaattatctcacttccaaagctttgcttctggt
gggaaatttttggtagaaagtagttcactagatttggattatatcgacccggtgcaattc
aaggatattccagattcttttgttaatatcccatcgaagtcatacccccttgttatcact
tttcataagtttttgatgatgcttgatggaacagtgggtatttcgtacttctcaagattt
cctgatgcacataaaccttcaagaaccgttaccctgcaaagctttatcagatcaagagag
gttaattatgagagattcatatcatcttactggccctatttcaaatcccatctaataaaa
tatctcgactcttctgcagtttttactgagataatttctcatataaaaggtgggttagaa
gcaggaaaggcccatgatggtagactctctcgcgaggactatcttttactatctgaggct
cgggtgtctactcttaccagggagcaaagagacagagtttacgatatttttctagaatat
gaaaagaaaaagttcaagaagggtgaatatgatttgtctgacttagtaatggatcttcat
tttcgacttagaaatgaaagatatgaaggtgatcacattgattttgtgtacattgacgag
gtgcaggacctgaccatgagacagattgctcttttcaagtatgtcagtaaaaatattgat
gagggatttgttttctcgggtgatacagcacaaactattgctaagggggttcattttagg
ttccaggatatacgccatttgttcttcaaggaatttgtattgggctctagaactgatgca
actgatgaaaagaaagagaaaggaaaattatcgaaaatttttcatttgagccaaaacttt
cgcacacatgctggtgtgcttaacttagcacaaagcataattgaccttctttaccatttc
ttccctttaactattgatgaattgaaccctgagacaagccttataaatggggaagctcca
gttttgattgaatgtgggaatttcaaagatgcattgtcaactatttttggagatagcgaa
aacgccaaaggaaatgctggttttggagccgagcaggttatattagtgcggaatgattct
gctaaggaggaaatttctaaatatgttggaaagaaagctcttgttctgacaatattggag
tgcaagggcctagagtttcgggatgtcttgttgtgtaacttctttgggtcatgccctttc
aaacattggagagtcttatatcagtttatgaatagattaatttggttgattctaaatccc
ttatatcttttccaagttttgatgaggcaaaacacaatgtcttgtgctctgagctga
DBGET
integrated database retrieval system
