Vitis vinifera (wine grape): 100855316
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Entry
100855316 CDS
T01084
Name
(RefSeq) polyadenylate-binding protein 2 isoform X2
KO
K14396
polyadenylate-binding protein 2
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100855316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100855316
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100855316
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
NOCA1_mid
CALCOCO1
HDV_ag
DUF7310
RRM_7
RBD_DEAH11
UBR4
DUF4140
RRM_11
DUF724
OmpH
Motif
Other DBs
NCBI-GeneID:
100855316
NCBI-ProteinID:
XP_059594515
LinkDB
All DBs
Position
7:complement(join(23864339..23864387,23864547..23864617,23864729..23864920,23873523..23873593,23874510..23874612,23874724..23874846))
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AA seq
202 aa
AA seq
DB search
MDEEEHEVYGGEIPDEGEMEGDMDAHNADVDMATNDDDAVKELDEMKKRLKEMEEEAAAL
REMQAKVEKEMGAVQDPASAAVTQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN
RVTILTDKYGQPKGFAYVEFLEVEAVQEALLLNESELHGRQLKVLAKRTNVPGMKQFRPR
RFNPYMGKAPRFRRPMRYMPYY
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagagcacgaggtgtacggaggagagatccccgacgagggcgaaatggaa
ggagacatggacgctcacaacgccgacgtcgatatggccaccaacgacgacgacgctgtg
aaggagctggatgagatgaagaaaaggctgaaggagatggaggaggaggcagcggctctt
cgtgagatgcaagctaaagtggagaaggaaatgggcgctgttcaagatcctgctagtgcg
gctgttactcaagcaaacaaggaggaggctgattcacggtcggtgtttgtgggcaatgtt
gattatgcatgcacaccagaagaagtgcagcagcatttccagtcatgtggtacagtaaac
agggttactattctaacagataagtatggccagcccaagggttttgcatatgtggaattc
cttgaagtggaggctgttcaggaagctcttcttctgaatgaatctgagttacatggccgg
caattgaaggttttggctaagaggactaatgtgcctggaatgaagcagttccgtccaagg
cgtttcaatccttacatggggaaggctcccaggttcagaaggccaatgcgttacatgccc
tactactga
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