Vitis vinifera (wine grape): 100855332
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Entry
100855332 CDS
T01084
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100855332
09123 Folding, sorting and degradation
03018 RNA degradation
100855332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100855332
03041 Spliceosome [BR:
vvi03041
]
100855332
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100855332
mRNA degradation factors
5'-3' decay
Lsm complex
100855332
Spliceosome [BR:
vvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100855332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
100855332
NCBI-ProteinID:
XP_003633551
LinkDB
All DBs
Position
13:complement(join(28534111..28534200,28534614..28534666,28537316..28537387,28538394..28538475,28538628..28538630))
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaaggaaagaaacagttttggatctggcgaagttcgtggacaagggtgttcaa
gttaagcttactggtggaagacaagtaacagggacgctaaaaggttatgatcagttgcta
aaccttgtcttggatgaagctgtagagtttttaagagatccagatgatccacagaagact
acagatcaaaccaggcgccttggcctaatagtttgtaggggaactgcagtaatgctggtg
tcaccaactgatggcacagatgagattgctaacccttttatccagccagatggggcctag
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integrated database retrieval system
