KEGG   Vitis vinifera (wine grape): 100855389
Entry
100855389         CDS       T01084                                 
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6-like
  KO
K11292  transcription elongation factor SPT6
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100855389
   03036 Chromosome and associated proteins [BR:vvi03036]
    100855389
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     100855389
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    Other Histone chaperones and regulators
     100855389
SSDB
Motif
Pfam: SH2_2 SPT6_acidic HHH_7 Spt6_S1 YqgF HTH_44 Tex_central_region HHH_9 S1 Tex_N
Other DBs
NCBI-GeneID: 100855389
NCBI-ProteinID: XP_019073244
LinkDB
Position
13:join(20653562..20653604,20653697..20653789,20654638..20654746,20654842..20654929,20661329..20661410,20661604..20661730,20661831..20662089,20662184..20662393,20662480..20662605,20662725..20663111,20663204..20663314,20663399..20664208,20664566..20664707,20664845..20666010,20666113..20666322,20666807..20667284,20670330..20671297)
AA seq 1802 aa
MRNRRVLYDDEGKGVAGGMEDEDESMEVEVADSDSDVNEEEDDEEEEGQDEYEDDGFIVN
EDEQEDGDPDEPRQKKKKKKKIDLEKNFVLDEDDYVLLEDNNVLGIRRPKAGTKKFKRLK
KAGKDTDPRVHSDFFDEDGLLLDDIDDDEAKSKYDDEDVVGDDEMDGFIVDAEETDGCPV
RKLKRKSRQEYGVSSSTVEEAHDIFGDPNEYLNRRKKSLARIDQFDNSGRQMEGSLNNVY
EPFILTEKYLTEKDDLIRNIDMPERIQISEESTGPAPVDIMSIKEETSWILSQLTTKITW
FCKMKVIEGNDEGPDLFKKVEQDIERFLKLHHVEKHDIPFIAMYRKELCLSLLKDPEQDV
AENEDEDETKRTTRLKRNKILWVIKDLDRKWLLLRKRKNALQLYYNKRYEEELLKMHDEA
RLNLNKELFKSISNSLKNAESEIEVDDVNLKFNLHFPLDEVNVSQGQFKRPKRKSHYKVC
SNAGLWEVAAKFGCNSEQFGLQVTLVNVRREDLEDLKESPEEIASTFTGPVFETPQAVLK
GARHMAAVEISSEPCFRKHVRSIFMEEAVVSTRPTPKGNMVIDPSHEFSGFKWLHGKPLS
QFKDAQWLLIQRAEEEKLLEVTIKLPESTLNKLTSESNDCYLSDGVSISARLWNEQRKLI
LQDAFSNFLLPYMEKQARVFLTAKAKAWLLEEYGKQLWNRASVAPYQHKENDDELDEETA
PRVMACCWDPGNPATTFVMLDSLGEVMDVLHASSLIIWSRNNQKQQKQKKIDQERVREFM
TEHQPHVVVLGAVNLACRRLKEEIYELXNLXPCNLIIFKMMEENPRDVSQKMDGIRIVYG
DESLPRIYEHSRISSDQLPGQLGIVKRAVALGRFLQNPLAMIATLCGPGKEILSWKLGSL
GYLLTPDEKYEMVEQMMVDVTNQVGIDINLAAAHDWLFAPLQFVSGLGPSKAGHLQRALI
RIGAVTCRKKLIEHGLGTMSVFRSAVGFLRVRCCGMASASSNMDLLDDTRIHPESYNLAK
ILAKDVYKCFENDEIDDVVLEMAIGYVRNHPKYLEDLKIFEYAKDYEIKHGKNKRETLYD
IKMELLHGFRDWRSPYEEPSEDEEFLMITGENGDTLAEGKIVQATVRSIQSERVFCVLDS
GLDGILFKDGFSDERDEIDLTTKLQVGEILICKIKQIEKNRHRVVLTCKEIQSRSSKDQN
PRSVDPYYCEDQSSLSKEQEKAQKELAKKHVKPRMIVHPRFQNITFEEAMEYLSDKAVGE
STFHPSSRGSSYLSLTIKIYDGVYAHKEITEGGKDQKDAMSLLHLGKTLKIGDENFEDLD
EVMDRYVDPLVTHLKAMLNYRKFRRGKKAEVDDLLRAEKSDYPMRIVYCFGICHEHPGAF
ILSYIRNTNPHHEYIGLYPKGFKFRKHTFDNIDRLVAYFQKHINDPWPEKALSIQSVAAM
VPMRSPAVGAPTGGGWESNTGGWRGQFNSSRDKTCTPSSRGGNENRSRGDSGDGWSSFPG
AEVLNSPGREVPPAGWGSSSGRAGVENLGGGGRTKSWGSSGVGNWGHGRSTHHWGGSSRG
GTARGSNWGGARGNGRGSGSQGCGSNGHGPGRGCGRGHGSYNAKDQKEFGYGAGSERGSV
LNVEDKSWDSDGWGNLPGFKVQNPPSRAASSDGWGSWGRSKASDNNEGGGGSTDGWGNDK
ASGGNGSGSGEAGSSGPCTWGNGGANWEGVSNSNSNSHEDGTGGGGGGGGGGVGKGGWVG
SVSGSGGRENKSNADGDVAWDAACSKGNAASEVANTGWGSSKSNTTLSGGGNGWSGGGSG
GW
NT seq 5409 nt   +upstreamnt  +downstreamnt
atgcgtaacaggagagttttatacgacgacgaaggaaaaggcgtagccggtggaatggag
gatgaggatgagagcatggaagtggaagtggccgattccgattccgacgtgaacgaagaa
gaagacgatgaagaagaggaaggtcaagatgagtatgaggatgatgggtttatagtaaat
gaggatgaacaggaagatggcgacccagatgaaccaaggcaaaagaagaaaaaaaagaag
aaaatagatttggaaaagaattttgttctcgacgaagatgattatgtattacttgaagac
aataatgtcttgggcattcgtaggccaaaggctggaaccaaaaaatttaagcggcttaag
aaggctgggaaagatactgatccgagagtacactctgatttttttgacgaagatggatta
cttcttgacgacattgatgatgacgaggcaaaatcaaaatacgatgatgaggatgttgtt
ggagacgatgaaatggatggttttattgtagatgcagaagaaacagatggttgtccggtg
aggaagttgaaaaggaagtcaaggcaagaatatggagtgtcatcatctacagtagaggaa
gcacatgacatatttggtgaccctaatgaataccttaatcgtcgcaagaaaagtctagct
aggattgaccaatttgataactctggtaggcaaatggaggggagtctgaataatgtatat
gagccattcatcctcacagagaagtatttgaccgagaaggatgatcttataagaaatatt
gacatgcctgagaggatacagatatctgaggaaagcactggacctgctccagtagatatc
atgagtataaaagaggaaacttcttggatacttagtcaacttaccacaaaaataacatgg
ttctgcaagatgaaggttattgaaggaaatgatgaaggtcctgatctgttcaaaaaagtt
gagcaagacattgaaagattcttgaagttgcatcatgtggagaagcatgatattcctttt
attgcaatgtatcggaaggagctttgtctcagtctattgaaagatccagagcaagatgtg
gcagaaaatgaagatgaggatgagactaagagaacgactaggcttaagaggaacaagata
ctttgggtcatcaaggatttggatagaaagtggttgcttcttcgtaagaggaaaaatgct
cttcagttgtactacaataagcgctatgaagaagaattgttgaaaatgcatgatgaagca
agactcaatttgaataaggagctgttcaaatcaatttccaactctctcaaaaatgctgaa
tcagaaatagaggtcgatgatgttaacttgaagtttaatctgcactttcccctggatgaa
gtaaatgtttctcaagggcagtttaagaggcccaagaggaagtcacactacaaggtatgc
agtaacgctggcctgtgggaagttgcagccaagtttgggtgtaattctgagcaatttggt
ttgcaagttactctggttaatgtgagaagggaggatttggaggatttaaaggaatctcct
gaggagattgcttcaactttcacaggtccagtgtttgaaactccacaagctgtgcttaaa
ggtgctaggcacatggctgcggtggagatcagttctgaaccatgtttcaggaaacatgtt
cgaagtatttttatggaggaagctgtagtctcaactagacccacccccaaaggaaacatg
gtaatagatccttcccatgaattttcagggtttaagtggctacatggcaagcctctttct
caattcaaggatgctcagtggcttctaattcagagggctgaagaagagaaactccttgaa
gttactataaagttgccagagagtacccttaacaagctgacaagtgaatctaatgattgt
tatctcagtgatggtgttagtatatcagctcgactctggaatgaacagcgcaaattaatc
ttgcaggatgcattttcaaattttcttcttccttacatggagaaacaagctcgagtcttc
ttgactgccaaagcaaaagcctggctgcttgaggaatatgggaaacagttgtggaacagg
gcctcagtggcaccatatcagcacaaagaaaatgatgatgaactagatgaagaaactgca
ccaagggtcatggcttgttgttgggatcctggaaatccggcaaccacttttgtgatgttg
gactcattgggagaagtgatggatgtattgcacgccagctcccttatcatatggtcccgg
aacaatcagaagcaacagaagcagaagaaaattgatcaggaacgtgtccgtgagttcatg
actgaacaccaaccccatgtagttgttcttggagctgtgaacttggcttgtcggcggttg
aaggaagagatctatgagctataaaatttataaccgtgtaacctgattatatttaagatg
atggaggaaaatcctagagatgttagtcaaaagatggatgggatcagaattgtttatggg
gatgaatccctgcctcgtatatatgaacattcacggatttcttcagaccagcttcctggg
caactgggcattgtcaagcgagctgtggctcttggtcgttttttgcaaaatccactggct
atgattgctacactgtgtgggccggggaaagagatattatcttggaagcttggctccctg
ggctacctccttacacctgatgagaagtatgagatggttgaacagatgatggtggatgtc
accaatcaggtgggtattgacataaatttggctgctgctcatgattggctttttgctcct
ttacaatttgtttctgggcttggacctagtaaggctggtcatttacagagggcattaatt
agaattggagcagttacatgtcgaaagaaactgattgaacatgggcttggaacaatgagt
gtgtttagaagtgctgttggtttcttgcgtgtacgttgctgtgggatggcatctgctagc
agcaacatggatcttttggatgatacaagaattcacccagagtcttataatcttgcaaag
attttggctaaggatgtttataaatgttttgaaaatgatgaaattgatgatgtggtgcta
gagatggcaataggatatgttagaaaccatccaaaatatctagaagatctcaaaatcttt
gaatatgccaaagattatgaaataaaacatggaaaaaataaaagagagacactttatgat
ataaaaatggagttgcttcatggatttcgagactggagaagtccttatgaagaaccaagc
gaggatgaggagttccttatgataacaggtgaaaatggtgatacacttgctgaagggaag
attgttcaggcaacagttcgctcaatccaatctgaacgagtgttctgtgtgcttgactct
ggattagatgggatacttttcaaggatggtttttcagatgaaagggatgagattgacttg
acaacaaagctacaagttggtgaaatcctcatctgcaagattaaacagattgaaaagaac
agacaccgtgtggttctaacttgcaaagaaattcagtcaaggagcagcaaagatcaaaat
ccccgtagtgttgacccctactactgtgaagatcagagtagtttatcaaaagagcaggag
aaagcccagaaggagcttgcaaagaagcatgtcaaaccgaggatgattgttcatccgcgt
tttcaaaatattacatttgaagaagcaatggagtatctatcagataaagctgtgggtgaa
agtacttttcatccaagttcaagaggctcatcttatttgtctttaactattaagatctat
gatggagtttatgctcacaaagaaataactgaaggtgggaaggatcagaaggatgccatg
agtttgcttcatcttggaaagacgttaaaaataggggatgaaaattttgaggatttagat
gaggttatggatcgatatgttgacccattggtaactcacctgaaagctatgcttaattac
cgaaagttcaggaggggcaaaaaagcagaagttgatgatctcttaagagcagagaaatca
gattatccaatgaggatagtttactgttttggcatttgtcatgagcatcctggtgcattt
attctgagttatattagaaatacaaatccacaccatgagtacattggtttatatcccaag
ggcttcaagtttcggaagcatacttttgataacattgaccggcttgtggcatatttccag
aaacacattaatgatccatggccagaaaaagcactgtcaattcaatcagttgctgccatg
gtaccaatgagaagtcctgcagttggggcacctacaggcggtggttgggaaagcaacact
ggtggttggagaggccaattcaactcaagcagagataaaacttgtacacctagttctaga
ggaggaaatgaaaatagaagtcgtggcgacagtggtgatgggtggagcagttttcctggt
gctgaagtcctgaattcacctggcagagaagttccccctgctgggtggggcagcagcagt
ggtagagccggggttgaaaatttgggtggtggtgggaggaccaaaagttggggctcttct
ggggttggaaattggggtcatggtaggagtactcatcattggggtggcagcagcagggga
ggtactgcaaggggtagcaattggggtggtgccaggggaaatgggagaggtagtggtagt
caagggtgtggaagcaatggtcatgggcctggacgtggctgtggccgtggccatggttct
tacaatgccaaggaccaaaaagaatttgggtatggtgcaggttcagagcgggggtcagtg
ctgaatgttgaggataaaagttgggatagtgatggatggggcaacttgccaggtttcaag
gtccaaaacccacccagtagagcagcttcgtctgatggttggggcagctggggtaggagt
aaagcaagtgacaataatgagggtggtggaggaagcactgatggttgggggaatgacaag
gctagtggaggcaatgggagtggttccggggaggctgggagtagtggtccttgtacttgg
ggcaacggtggtgctaattgggaaggggtcagcaacagtaacagcaatagtcatgaagat
gggactggtggtggtggtggtggtggtggtggtggagtaggtaaaggcggttgggttgga
agtgtaagtggaagtggtggtagggagaataaaagcaatgctgacggagatgttgcctgg
gatgcggcatgctcgaaggggaatgctgcttcagaggttgccaatactggatggggttct
agcaaaagtaataccaccctttctggtggtggaaatggatggtctggtggtggcagtgga
ggttggtga

DBGET integrated database retrieval system