Vibrio vulnificus 93U204: VV93_v1c13810
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Entry
VV93_v1c13810 CDS
T03294
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vvl
Vibrio vulnificus 93U204
Pathway
vvl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VV93_v1c13810 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvl03400
]
VV93_v1c13810 (sbcB)
Enzymes [BR:
vvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
VV93_v1c13810 (sbcB)
DNA repair and recombination proteins [BR:
vvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
VV93_v1c13810 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VV93_v1c13810 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VV93_v1c13810 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AIL70471
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All DBs
Position
I:complement(1513076..1514497)
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AA seq
473 aa
AA seq
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MQQDNQPTFFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPE
AALITGITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLD
PYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHD
AMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVH
LNKCPILAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHD
VDTMLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDEN
EQRRWANHCREYFERRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagacaatcagcccactttcttcttttttgactatgagacttggggaaccagt
ccagcaaaagatcgcccatcgcaatttgctagcgttcgtaccgatgaaaacttcaatatc
atcggcgaaccattggtgatttattgtcgcccacctgccgattatttaccggcccccgaa
gccgcactcattaccggaattacgccacaaaaagcgcagaaagaaggcttacccgagcca
gaatttatcgcaaaaatccacgcagagttgtcgcgtccgaacaccactagccttggctac
aacagcattcgctttgatgacgaagtcacgcgttatacctgctatcgcaatttcctcgat
ccctattcatggagctggcaaaacggcaattcacgctgggatctgcttgatgtgatgcga
gcttgtcacgcattaagaccggaaggcgtagaatggccggaaaatgaagaaggctttacc
agctttaaactggagcacctttctgtggccaatggcattgaacacagtaacgcccatgat
gcgatggccgatgtgatcgccaccatcgaaatggcgaaaaaagtcaaagccgcgcaaccc
aaattgtttgattacttctttagcatgcgccataagcgtaagctcaatgagctgatcgat
attgttaacatgacccctttgatgcatgtctctggcatgttaggccgagaatgccaatac
accagttggattgtgccgttagcttggcacccgaccaacaacaatgcggtgattgtggtc
gacttagccaaagatcctcaacccctctttgatttggatgccgatgcgctgcatgagcgt
ctttacactcgtcatgatgagctcggcgatttattgcctgtgccagttaaattggtgcac
ttgaataagtgcccgattttagcgccagccaaaaccctcacagcggagaacgccgccaat
atcggcatcgaccgagaacaatgtttggcaaacttagcccttattcgccagcatccagaa
gtgcgagaaaagttggtgcagctgttctcaattgaacgcgagttcgagaaaagtcatgat
gtcgataccatgctgtacgacggtttcttctcgcctgccgacaaagcctcgatggacatt
atccgccaaaccgatccaacgcaccttgccgctttggacatcacgtttaacgataaacgc
atcgagccactgctgtttcgctaccgtgcgcgcaattacccatggacgttggatgagaac
gaacagcgccgttgggcgaatcattgccgcgaatacttcgaaaggcgaattgaagagtac
atgcttaatttggaaaacttagttcacgaacatgaaagtgacgaaaagaaaatggcgata
ttaaaatccgtgtaccgctatactgagagcttgatctcataa
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