Vibrio vulnificus 93U204: VV93_v1c29080
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Entry
VV93_v1c29080 CDS
T03294
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vvl
Vibrio vulnificus 93U204
Pathway
vvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VV93_v1c29080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvl03019
]
VV93_v1c29080
03400 DNA repair and recombination proteins [BR:
vvl03400
]
VV93_v1c29080
Enzymes [BR:
vvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VV93_v1c29080
Messenger RNA biogenesis [BR:
vvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VV93_v1c29080
DNA repair and recombination proteins [BR:
vvl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VV93_v1c29080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AIL71977
LinkDB
All DBs
Position
I:complement(3208232..3210067)
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AA seq
611 aa
AA seq
DB search
MTSTLLADPSDASMTPQSVLSQVFGYQTFREGQLSVIEAAVEGKDSLVVMPTGGGKSLCY
QIPALVRSGITLVISPLISLMKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLK
LVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKHHFPHVPF
MALTATADDATRKDILSRLHLNEPHVYLGSFDRPNIRYDLVEKHKPVSQVIRYLESQKGN
CGIIYCGSRKKVEMLTEKLCNNHIRAAGYHAGMGADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADITWLRRMLDEKDD
GPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGMGYVVEVLRGMQNIRIREHGHDKISTYGLGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDMTLELAVPRLDTAARSAKADKLSNKHYDKKLF
AKLRKLRKSIADEEEIPPYVVFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFL
DLIQEHITHYG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacttccacgctgcttgccgacccttccgatgcctcgatgacgccccaaagcgtctta
tcacaggtgtttggctatcagaccttccgtgaggggcagctgtcggtgatcgaggcggct
gttgagggaaaagacagtttggtggtcatgcccaccggtggcggtaaatcgctgtgctat
caaattcctgctctggtgcgttcgggcattactttagtgatctcccctttgatttcgctg
atgaaagatcaggttgaccaacttaaagccaacggtgtggcggcagaatgtgtcaattcg
accttatcacgtgacgctttactcagcgtctacaaccgcatgcacgcgggacagctcaaa
ttggtgtacgtttcaccagagcgggtgttgatgcgtgactttattgagcggctggaaaat
ttgcccttggcgatgattgctgtcgatgaagcgcactgtatctctcagtggggacacgat
ttccgccccgagtacgccgcgttagggcaattgaagcatcattttcctcacgtgccgttt
atggcgttaacggccacggcagacgacgcgacgcgcaaagacattttaagtcgcttgcat
cttaatgagcctcacgtgtatctcggcagttttgatcgccccaacattcgctatgaccta
gtggagaagcacaagccggtctctcaagtgattcgctatttggaaagccaaaaagggaat
tgcggcattatttattgtggtagccgtaagaaagtcgaaatgctgaccgagaaactgtgc
aataaccatattcgagcagcgggttatcacgcgggaatgggcgcggatgagcgcgcttat
gtgcaagaagcgtttcagcgggatgatatccagattgtggtggcgacagtggcctttggt
atggggatcaacaaacccaatgtgcgctttgtggtgcatttcgatattccacgcaatatc
gaatcgtactatcaagagacgggtcgagcagggcgtgatggcctgcccgccgaagcaatg
atgctctacgatccggcagacatcacttggttgcgccgcatgttggatgagaaagacgac
ggtccgcaaaaacaagtggaaagtcataagctcaatgccatgagtgcctttgctgaggcg
caaacctgtcgccgccaagtgctgctgaactatttcggtgaataccgcgagaagccttgc
ggcaattgcgatatttgcttagatccgccgaagcattttgatgcgacggaagaagcacgc
aaagcgttgtcgtgtgtttatcgcgttaatcagagttttggtatgggctacgtggtggaa
gtgttgcgcgggatgcaaaacattcgtatccgggaacatggccacgataagatttcgact
tacggtttagggcgcgatcacagccatgactattgggtgagcatttttcgccaactgatc
cataaagggctgctgtttcaaaacatcacccgcaattcgactttacagttaaccgaagaa
gcaaggccattgctgcgtggtgatatgacgttggagctggcggtgccacgtttggatact
gccgcgcgcagtgccaaagcagataagctatcgaacaaacattacgacaaaaagctgttc
gccaaattgcgtaagctacgcaaatcgattgccgatgaggaagagatcccaccgtatgtg
gtgttcagtgatgccacgctgatcgacatggctgaaatattgccgacctcatatggtgaa
atgctcgcggtgagcggcgtcgggcagcgcaaactagaaaaatacgcggatccgttttta
gatttgattcaggagcacatcactcattatggatga
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