Vibrio vulnificus 93U204: VV93_v1c37270
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Entry
VV93_v1c37270 CDS
T03294
Name
(GenBank) DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vvl
Vibrio vulnificus 93U204
Pathway
vvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VV93_v1c37270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvl03019
]
VV93_v1c37270
Enzymes [BR:
vvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VV93_v1c37270
Messenger RNA biogenesis [BR:
vvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VV93_v1c37270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
P-loop_SecA
UTP25_NTPase-like
AAA_22
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AIL72783
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All DBs
Position
II:851011..852267
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AA seq
418 aa
AA seq
DB search
MTNTFIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLP
LIQMLSQQSREETAPTHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQ
QEQLAKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMP
EERQTLLFSATFETRVKALAYRLMKEPVEVQVAAANSTADTVKQMVYPVDKKRKSELLAY
LIGSRNWQQVLVFTKTKQGCDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA
LIATDVAARGLDIAQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAVSFMSRDEEYLLQ
AIENLLDTRLPQEWLAGFEPSEKENYVEDTPSKRTSRSAEKRKLKQKLKIHQGRGKKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatactttcattgagcttggacttgactcttcgttaagcgatcatctttctcag
ctaggatttaacacaccaacaccaattcaacagcaagcgattccacatcttttgcaaggt
agagatgtgctggctgccgctcaaacagggacaggaaaaaccgccgcttatggcttgcca
ctgatccaaatgttgtcacaacagtcgcgagaagaaacggcacccacacatcctagagca
ctgatcttagcgccaacccgagagctggcgcagcaagtgttcgacaatttgaaacagtat
gcgcaacacactgagttggctatcgttaccgtatacggtggaaccagtatccgtgttcaa
caagaacaattggcaaaaggtgttgatatcctcattgcgacgcctgggcgtctattggat
catctttttaccaagaaaacctcattgaaccagttgcaaatgctggtgttagacgaagcc
gatcgcatgttggatatgggctttttgcccgacattcagcgcattatgaaaagaatgcct
gaagagcgtcaaacgctgctgttttccgctacgtttgaaacacgtgtcaaagcattggct
tatcgtttaatgaaagagcccgtcgaagttcaggttgccgcggccaacagcaccgccgac
accgttaagcagatggtgtatccggtcgacaaaaaacgcaaaagcgagttgttggcgtat
ctcattggctctcgtaattggcagcaagtactggtatttaccaaaactaagcaaggctgc
gatgctttggtgagtgaattaaagctggatggcatcaaggccgcttccatcaatggcgac
aaatcgcaaggtgcacgtcagaaagcgctggatgattttaaatcgggtaaagtacgcgcg
ttgatcgccaccgatgttgccgcacgcggtttggatattgctcagctagagcaagtcgta
aacttcgatatgccttacaaggcagaagattacgtgcaccgaattggccgaacggggaga
gcagggcaaacggggctcgcagtgtcttttatgtcacgagatgaagaatacttgctgcaa
gcgattgaaaatctgctggatacccgtttacctcaagaatggttagcgggatttgagccc
agtgaaaaagagaactacgttgaagatacacctagcaagcgcactagtcgttcagcagaa
aaacgtaagcttaagcaaaagttaaaaattcaccaaggccgtggcaaaaagcgctga
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