Vibrio vulnificus MO6-24/O: VVMO6_00165
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Entry
VVMO6_00165 CDS
T01415
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Pathway
vvm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VVMO6_00165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvm03021
]
VVMO6_00165
03400 DNA repair and recombination proteins [BR:
vvm03400
]
VVMO6_00165
Enzymes [BR:
vvm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VVMO6_00165
Transcription machinery [BR:
vvm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VVMO6_00165
DNA repair and recombination proteins [BR:
vvm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VVMO6_00165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ADV85187
LinkDB
All DBs
Position
I:178515..182717
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDLHAEVEQMREELDTTNSETKRKKLTKRLKLVEAFISSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREMINAKGEGMYLAGPAEAEKAYRTK
TAALHARVKVRITETVVDEDGHSTTETKMVDTTIGRAMLWQIVPKGLPFSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPPAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVEMMPHIEGGDVKVALTELAL
GRVVAEDIVKPGTEEILIPRNTLLDEKWCQIINDNSVDKITVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQVKNNGSVKL
NNAKFVINKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSSLSKADGDAVTAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDAAGNDVMIPGTDMPAQYFLPGKAIVNIEDGAEVGIGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEYSGTVSFGKETKGKRRLIITREGGETYEEMIPKHRQLNVFEG
ERVERGDVIADGPEAPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLPGETVEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQEGPS
AAQATDNLAALLNAGFSSDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctgaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctgtcttcaccagacatgattcgttcatggtcttttggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctattctgtgcgcgt
atctttggcccagtaaaagactacgagtgtctttgtggtaaatacaagcgcctgaagcac
cgtggtgtgatctgtgagaaatgtggtgtagaagttactcagactaaagttcgtcgtgac
cgtatgggccacatcgaactggcttctccagttgctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactcatggatatccctctacgtgatatcgagcgtgttctttac
ttcgaaatgtacgtagtcactgaaccaggtatgacggatctagaaaaatctcagatgctc
actgaagaagagtacctggatcgtctagaagagtggggcgatgagtttactgcgaaaatg
ggtgcagaagcgatcaaggacctactaggttcaatggatctgcatgctgaagttgagcag
atgcgcgaagagctagataccactaactctgaaactaagcgtaagaaactgactaagcgt
ttgaagctggttgaagcgtttatctcttcaggcaacaaccctgagtggatgatcctaact
gtacttccagttcttccgccagatctacgtcctctagtaccactagatggcggtcgcttt
gcgacttcagatctgaacgacctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagccgctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactggataacggtcgtcgtggtcgtgcgatcacaggttcgaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacaccagtgtggtcttccgaagaagatggcacttgagctgttcaaaccattc
atctacagcaagcttgagactcgtggcctagcgacgacaatcaaagcggctaagaaaatg
gtagagcgtgaagaagcggtcgtttgggatatcctagacgaagtaatccgtgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctaggtatccaggcgttcgaaccagta
ctgatcgaaggtaaagcgatccagctacacccacttgtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaaccctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgaaatgatcaacgcg
aaaggcgaaggcatgtacctagcaggtcctgctgaagctgaaaaagcataccgcactaaa
actgcggcgctacacgctcgcgtaaaagttcgtatcactgagacagtggtagatgaagat
ggtcatagcacaacagaaaccaagatggtggataccactatcggtcgtgcaatgttgtgg
caaatcgtaccgaaaggcctaccgttcagcatcgttaaccaaaagctaggtaagaagcaa
atctcgaacctactgaacgaggcgtaccgtaagctaggtctgaaagatacagtaatcttc
gctgaccaaatcatgtacactggttttgcttacgctgcactttctggcgtgtctgttggt
atcgacgacatggttgtaccaccagcgaagtacacggaaatcgcagaagcggaagaagaa
gtacgtgaaatccaggaacaataccagtctggtcttgtaactgcgggcgaacgttacaac
aaagtgatcgatatttgggcatcaaccaacgatcgcgtagcgaaagcgatgatggagaac
ctttcttctgaaacggttatcaaccgtgacggtgaagaagagcaacaagagtctttcaac
agcatctacatgatggcggactcaggtgctcgtggttctgcagctcagattcgtcagcta
gcgggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcact
gcaaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgtagcacaagacgtggttgtaacagaacacgactgtggcacgctagaaggcgtt
gaaatgatgcctcatatcgagggtggtgacgttaaagtagcactgactgagcttgcgcta
ggtcgtgtggttgctgaagacatcgttaagcctggtactgaagaaattcttatcccgcgt
aacacgctattggatgagaaatggtgtcagatcatcaatgacaactcagttgacaagatc
actgtacgttctgttgtaacgtgtgactctgactttggttgttgtgcgcagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtgggtgtaattgctgct
cagtctatcggtgaaccaggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcagcagaaaacagcgttcaagttaagaacaacggttctgttaagctg
aacaacgcgaaattcgttatcaataaagatggcaagctagtaatcacttctcgtgcttct
gagctgactatcattgatgaattcggtcgtaccaaagagaaacacaaactgccttacggt
tcttcactgagcaaggcagatggcgacgcagtaactgctggtgaaacagtagcaaactgg
gaagcgcacaccatgccaatcatcactgaagtggcaggtcgtgttcaattcgttgacatg
attgatggtgtaactgtttctcgtcaaacagacgatctaacaggtctatcttcaagcgaa
gtgacggatgccgcggctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgcggcaggtaacgatgtaatgatccctggtactgatatgccagctcaatacttc
ctacctggtaaagcgatcgtgaacatcgaagatggcgctgaagtaggcattggtgacact
ctagctcgtattcctcagaaatcgggcggtaacaaagacatcaccggtggtctaccacgc
gtagctgacctatttgaagctcgtaagccgaaagagccagctatccttgcagaatactct
ggtactgtaagcttcggtaaagagaccaaaggtaagcgtcgtttgattatcactcgtgag
ggtggtgagacatacgaagagatgattcctaagcatcgtcagttgaacgtgttcgaaggt
gagcgtgttgaacgtggtgacgtaattgctgatggtccagaagctccacacgatatcctg
cgtctacgtggtatccacgcagtgacccagtacatcgcgaacgaggttcaggaagtttac
cgtctgcaaggcgttaagattaacgataagcacattgagactatcgttcgtcagatgcta
cgtaagtgtactattactcatgctggtgactctgagttcttaccaggtgagacagtagaa
tactcacaagtgaagattgctaaccgtaatctagaagcagaaggcaaagagccagctcgc
ttcgaacgtgagctactaggtatcactaaagcgtctcttgcaactgaatcgttcatctct
gcagcatcgttccaggaaacgactcgcgtactaacagaagcagcagtttctggtaaacgt
gatgatctacgtggcctgaaagagaacgtgattgtaggtcgtctgatccctgctggtaca
ggttttgcgtaccaccaagatcgtcaggcgaaacgtgctcaagagcaagaaggcccatct
gctgcgcaagcaacggataacctagcggcgctactgaacgcaggtttctcttcagacgag
taa
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integrated database retrieval system
