Vibrio vulnificus MO6-24/O: VVMO6_00687
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Entry
VVMO6_00687 CDS
T01415
Name
(GenBank) exodeoxyribonuclease V beta chain RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Pathway
vvm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VVMO6_00687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvm03400
]
VVMO6_00687
Enzymes [BR:
vvm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VVMO6_00687
DNA repair and recombination proteins [BR:
vvm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VVMO6_00687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_25
AAA_11
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADV85709
LinkDB
All DBs
Position
I:780928..784548
Genome browser
AA seq
1206 aa
AA seq
DB search
MTHKPEPTPLQTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVD
QILVVTFTEAATGELRDRIRARIHDARLAFARGESQDPVIEPLLRDFPDHKQAAAILLQA
ERQMDEAAVFTIHGFCQRMLTQNAFESGSRFNNEFVTDESQLKAQVVADYWRRNFYPLPT
ALAGEVRQIWGSPAALLRDIGRYLTGAPLALSVNAMSGDLAALHQDNLQKITQLKSAWRA
AQPELQTLIEQSDINKRSYTKKSLPEWLETVSRWAESDTFDYHYPDKLAKFAQSELLAKT
AKGTAPMHPLFEQIDAFLANPASLKAPLLAHAIEQCRAWLAKAKEQKQRLSFDDLLTRLS
AAIDQDEAQLLASRIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDHPQTGLFMIGDPKQAI
YGFRGADIFTYIKARNQVSAHYTLGTNWRSSAEMVSAVNQIFQQPDSPFIYDQDIPFLPV
NASPKADQRIWNMAGQKQPALTYWLQECEEKPVAKGEYQQVMAEATASQIQQILTLSQQG
QASFQQGEQQHAIQAGDIAVLVRTGSEGRLIKQTLAKQGIASVYLSNRDSVFLSPVAQDV
QRILQAVLTSEDDRALRAALACELFALDAASLDKLNNDENAWEKALSEFKEYRKLWLSRG
VMPMLRAVMAKRHIAERLLTQQEGERTLTDLMHLAELLQQASNEIDSDHGLLRWFAQSIS
DAHNGIGGSDEQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVFAHREASEAKFYDAQT
DRTVLDITGSDAALQQADKERLAEDLRLIYVALTRAVYGCFIGAAPLRNGRSTKEPTGVH
RSAMGYLVQNGQEGGIATLQQALAGQQTQSDSIVVTSPPTLPDERYQPIAAPALALSAQE
LATPIDRLWRITSYSGLVKQGSHQSDYDASLEVVGFDIDSSAEDPQAPVQEVEKSIFTFP
RGASAGTFLHSLFEEVEFTQAADSEQNRQVISELMEKNLIDLEWLPVLQQLVDTVLSTPL
DGKHLYLNQKTPSQRLVEMEFLLPIEVLSAASLNQVIQRHDPLSARAGDLGFQTVQGMLK
GFIDLVFEHQGKYYVLDWKSNHLGDAVHLYHGEALQGAMVDHRYDLQYQIYALALHRFLR
SRLANYDYQLHFGGVYYLFLRGMDGESEHGIFSAKPSLDLLTEMDRLIDGLEPQPRSTQG
GQMELL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacaagcccgagccaaccccgttacaaaccatgacctttccattgcatggcgca
aggttaattgaagcgtcggcggggacaggtaaaactttcaccattgctggattgtattta
cgcttactgcttggtcatggcagtgaagagacgcgtcatcaagtcccactgacggtggat
caaatcttggtcgtgacctttaccgaagccgcaacgggtgagctgcgtgatcgcattcgt
gcgcgtattcacgatgcgcgtttggcgtttgctcgaggagaaagccaagatccggtcatt
gagccgctgctgcgtgactttcccgatcacaagcaggccgccgccattttgctgcaagcc
gaaagacagatggacgaagcggcggtgttcaccattcacggtttttgccaacggatgctc
acgcaaaatgcgtttgaatccggcagccgttttaacaacgaatttgtcaccgatgaaagt
cagttaaaagcgcaagtggtggccgattattggcgacgcaatttctatcccttgcccacc
gcattggcaggtgaggtgcgccagatttggggctcacccgcagcgttgttgcgcgacatt
ggccgctatctcactggtgcgccattggcgctgagcgtcaacgcgatgagtggcgatctt
gcggcgttgcatcaagacaacctgcaaaaaattacgcaactcaaaagtgcttggcgagcg
gcgcagccagaattgcaaacgctcatagaacaatccgatatcaacaaacgcagttacacc
aaaaagtcactaccagagtggttagagacggtgagtcgatgggcggaaagcgacacgttt
gattaccactacccagataagctggccaaatttgcacaaagcgagctgctggccaaaaca
gccaaaggcactgcgccaatgcatccgctatttgagcaaattgacgcgtttttggccaat
ccggccagcttgaaagccccattgttggcacacgcgattgagcaatgtcgcgcatggctg
gcgaaagccaaagagcagaagcagcgtttgtcgtttgacgatttgttaacgcgtttatcc
gcagcgatcgatcaagatgaagcgcagttattggcaagtcgaattcgtacgctttatccc
gttgccatgattgacgagttccaagataccgaccctttgcaatacagcatctttagtcgt
atttatttggatcacccacaaactgggctgtttatgatcggcgacccgaagcaggcaatt
tacggcttccgtggggcggatatcttcacttacatcaaagcgcgtaaccaagtgagtgcc
cactacaccttgggaacaaactggcgctccagtgctgagatggtttcagcggtgaaccag
atatttcagcagcctgatagcccgtttatctatgatcaagacatccctttcttgcctgtc
aacgctagccccaaagcggatcagcgcatttggaacatggcaggccaaaagcagccagct
ctgacctactggttacaagagtgcgaagaaaaacccgtggcgaaaggggagtatcagcaa
gtgatggccgaggcgaccgcgagtcagattcagcagattctgacgctttcgcagcaaggt
caagcgtcattccagcaaggtgagcaacagcacgccattcaagcgggtgacattgcggtg
ttggtacgaaccggcagcgaaggccgactgatcaagcaaactcttgctaagcaaggcatc
gccagtgtttatctttcgaaccgcgatagcgtttttctcagccccgtcgcgcaagatgtt
cagcgcatattgcaagcggtgctcaccagcgaagacgatcgcgcattgcgggcggcgttg
gcttgtgagctgtttgcccttgatgccgccagtctggataaattgaataacgatgaaaat
gcgtgggaaaaagcgctcagtgagtttaaagaataccgcaagctgtggctttctcgtggt
gtgatgccgatgctccgagcagtgatggccaaacgccatattgcggagcgactgctgact
cagcaagaaggtgagcgcacactcactgacctgatgcatttggcggaactgctgcagcaa
gcaagcaatgagatcgacagcgaccacggtttgttgcgttggtttgcccaatcaatcagt
gatgcacacaatggtattggcggcagcgatgagcagatccaacgtctcgaatcggaacgg
aacttggtgcagatcgtcaccatccacaaatcaaaagggcttgagtacgatctggttttt
ctcccgtttgtctttgctcatcgcgaagccagcgaagccaagttttacgatgcgcaaacc
gatcgcaccgtgttagatatcaccggcagcgatgccgcgttgcaacaagcggacaaagaa
cgattagccgaagacttacgccttatttatgtggcgctcactcgagccgtttatggctgt
ttcattggtgcggcgccactgcgtaatggtcgctccacgaaagagccaacgggcgtgcat
cgcagtgccatggggtatttggtgcaaaatggccaagaagggggaattgctacgctgcaa
caagcgttggcaggacagcaaacgcagtcagacagtattgtcgttacctcaccaccaacc
ttgccagatgagcgatatcaacctatcgcagcgcccgcgttggcgctctctgcgcaagag
ctggccacgcctatcgatcgtttatggcgcatcaccagttactccggcttggtcaagcaa
gggagccatcaaagcgactacgatgccagtttagaggtggtggggtttgatatcgactct
tctgccgaagatccgcaagcgccagttcaagaagtggagaagtcgatttttaccttcccc
cgtggtgccagtgctggtacgtttttgcactcgctgtttgaagaggtggagtttactcaa
gcggcagactctgaacagaatcgtcaagtgatcagcgagctgatggaaaaaaacttgatc
gacttagaatggttgcccgttttgcagcagctggtggataccgtgttgtcgacgccgctt
gatggcaaacatctgtaccttaaccagaaaacgccttcacagcgtttggtggaaatggag
ttcttattgccgatagaagtgctcagcgctgccagtttaaaccaagtcattcagcgccat
gatcccctctcggctcgcgcgggggatctgggtttccaaacggtgcaaggcatgctcaaa
ggctttattgatttggtgtttgaacaccaaggcaaatattacgtattggactggaaatcc
aaccatctaggggatgctgtacatttatatcacggtgaggcattgcaaggggcgatggtg
gatcatcgctacgatttgcaataccaaatctatgcgttggcgctacaccgttttctacgc
agccgtttggccaactatgattaccagcttcattttggtggcgtctattatctgttcctt
cgtggtatggatggcgaaagtgaacacggtatcttttctgccaagccctcgttggattta
ttaacggaaatggatcgtttgattgacggtcttgagcctcaacctagatcgacccaaggt
ggtcagatggagttactatga
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