Vibrio vulnificus MO6-24/O: VVMO6_00688
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Entry
VVMO6_00688 CDS
T01415
Name
(GenBank) exodeoxyribonuclease V alpha chain RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Pathway
vvm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VVMO6_00688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvm03400
]
VVMO6_00688
Enzymes [BR:
vvm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VVMO6_00688
DNA repair and recombination proteins [BR:
vvm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VVMO6_00688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
AAA_11
Helicase_RecD
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
nSTAND3
AAA_16
DEAD
NPHP3_N
UvrD_C
AAA_28
CbiA
NTPase_1
TrwB_AAD_bind
ResIII
MukB
DUF87
T2SSE
ATPase
AAA
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ADV85710
LinkDB
All DBs
Position
I:784545..786659
Genome browser
AA seq
704 aa
AA seq
DB search
MMLNGSLQATLSMLEQQAQQGYLRLLDYQFARFIGEQSQHSGLALLAAAVSAELGKGHIC
LPLFDELGQVCELASKIGLFGEAATELNAQLQSFDWRALLQTSRLVGTQGEAVPLMFDGE
RVYLHRYWHYEVVLAQKLNQLSHGIELNASSAASLSALLDRLFARDYRFLFETLIAAQAS
GSTQVQRQQWVCDFLDVVEEHRLDWTAIEQVLSQVSKVSDLNALDHLVPHAACINWQKVA
AAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQAGAQTPTIRLVAPTGKAAARLTESIG
KAVQSLAVEPSLKALIPTEASTLHRLLGAIPGSAEFRHHSQNPLHLDVLVVDEASMVDLS
MMYKVIDALPKHARLILLGDKDQLASVEAGAVLGDICAFSASGYSAEQAATLAKLTGYQA
LPKSASRLAPVADSLCMLQKSYRFDARSGIGQLAKAINAGSVAALESVWQREFNDIEHHP
LDASHYNHMLQTLVSEYSHYLARIALTQQHLEPKERESSAVRAKAGLNLFHRCRLLCAVR
EGNFGVAGLNLRIERALAARNLIKVKDEIWYHGRPVMVTRNDYALGLYNGDIGICMWDDT
DEAPRLKVYFELADGSVKAVLPSRVPEHETAYAMTIHKSQGSEFDFTLMILPADFSPILT
RELIYTGITRAKKRLALYADLQVLKRGMKIKTQRASGLPHRLGQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgaatgggtcactccaagcgacgctgtcgatgctggaacagcaagcccaacaa
ggctacctgcgcttattggattatcaatttgcgcgctttattggtgagcagagtcagcac
agcggattggcgctgttggccgctgcggtcagtgccgagttaggcaaagggcatatttgc
ttgcctctgtttgatgaacttggccaagtctgtgaattggccagcaaaattggcctgttt
ggtgaggcggcaaccgagctgaacgcccagttgcagtcgttcgactggcgagcattgctg
caaaccagtcgcttggttggcacccaaggggaagcggtgcccttgatgttcgatggggaa
cgagtttatctgcatcgctattggcactatgaagtcgttttggcgcaaaaacttaatcaa
ttgagtcacggtattgaacttaacgccagctcagcggcatcgttatccgcattgctggat
cgattgttcgcgcgagattaccgctttttgttcgaaacgctgattgccgcgcaagcgagc
ggcagtacccaggtgcagcgacagcaatgggtgtgtgattttctcgacgtggttgaagag
caccgtttggattggacggcgattgaacaagtgctgagccaagtaagcaaagtctcagat
ctcaacgcgctggatcatcttgtgcctcatgcggcctgcattaattggcaaaaggtagct
gccgcggtggcgttgacgcgtcgttttgccgtgatctctggggggccgggaacaggcaaa
accaccaccgtcacgaaattgttggcggcgctgattgagcaagctggagcgcaaacgccc
accattcgtttggtggcgccaacgggtaaagcggcggcgcgtttgaccgaatccatcggt
aaagcggtgcaatctttagccgtagagccgagtttaaaggcgttaatccccacagaagcc
tcaacattacatcgcttgttaggcgcgatccccggcagtgccgagtttcgtcatcacagt
caaaacccgctgcatttggatgtgctggtggtggatgaagcctcaatggtcgatctttcg
atgatgtataaagtgattgacgcgctgcctaaacatgctcgtttgattttactcggtgat
aaagatcagttggcctccgttgaagcgggggcggtgctgggggatatctgcgcattttct
gcttccggatacagcgcagagcaagcagcaacgctcgcgaagttaacgggttatcaagcg
ctgccaaagagtgccagccgtttggcaccagttgcagatagcttgtgtatgttgcaaaag
agctatcgttttgatgctcgctcaggaattggccaattggcaaaagcgatcaatgccggt
tccgtggcggcgttagagagtgtatggcagcgagagtttaacgatatcgaacatcaccca
ttggatgccagccactacaaccatatgttgcaaacgcttgtaagtgagtactcacattat
cttgctcgcattgccttaactcagcagcatcttgagccgaaagagagagaaagcagtgct
gttcgagccaaagcgggactgaatttgtttcatcgttgccggttactttgcgccgtgcgt
gaaggcaattttggtgtggccggacttaaccttcgcattgaaagagccttagctgcgcgg
aatttgattaaagtgaaggacgagatttggtatcacggcaggcctgtaatggtgacgcgt
aatgattacgcgcttgggctttacaacggcgacattggcatctgcatgtgggatgacact
gacgaagccccgcgtctaaaagtctattttgagttggctgacggcagcgttaaagcggta
ttaccaagccgagtgccagaacatgaaacagcctatgcgatgacaatacataaatcacaa
ggcagcgaatttgattttaccttgatgattttgcctgccgatttcagcccaatactgacg
cgagagctgatctacacgggcattactcgagcgaaaaagcgtttagcgctgtatgccgat
ctccaagtcctgaaacgtggtatgaagataaaaacacagcgagcgagcggcctgccacac
cgtttgggccagtaa
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