Vibrio vulnificus MO6-24/O: VVMO6_00719
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Entry
VVMO6_00719 CDS
T01415
Name
(GenBank) ATP-dependent DNA helicase RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Pathway
vvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VVMO6_00719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvm03019
]
VVMO6_00719
03400 DNA repair and recombination proteins [BR:
vvm03400
]
VVMO6_00719
Enzymes [BR:
vvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VVMO6_00719
Messenger RNA biogenesis [BR:
vvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VVMO6_00719
DNA repair and recombination proteins [BR:
vvm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VVMO6_00719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
DnaD_N
SNF2-rel_dom
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ADV85741
LinkDB
All DBs
Position
I:complement(813523..815442)
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AA seq
639 aa
AA seq
DB search
MQHDIRDTLHHIFGFEALRQGQQQVVDAVLTGHSAAAIFPTGSGKSLCYQLPALHLPHLT
LVVSPLIALMKDQLAFLHSKGIAAAAIESGQSKEQTQAIMQAVNAGEIKILMISVERLKN
ERFRQFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPSYQATLNIPQVLLLTATATENV
VADMQRKFAIKKDNVVVTGFYRANLDLHVTPCRNEDKADALLKIVQQAPNAPTIVYVTLQ
HTASQVATLLQDEGIRASAYHAGLDNELRSTIQTQFMQGQLDCIVATIAFGMGVDKADIR
RVIHFDLPKSIENYAQEIGRAGRDGQKSDCIVLANQSGLSTLENFIYGDTPERDDISSVI
QQIQASGERWEVIIARLSNDTNIRQLPLKTLLVYLEMAGLIEPMYAYFAEYRFKFLRPAS
EIVQRFQGERGAFLQAVFDCSPQARVWCQTDFEALWHRYHAERSRCVAALDYLHQQGWIE
LESKQMTDVFAVKPIEYSAEDLTEQIYQLFKNKEQSDVERIHHMLHFFESGECLSHKLAH
YFSDHNAPQQCGHCSACRGQQATLPKEMLTDIPQQALDEWIAQLQSQTSQPLSAELITRF
LCGISTPKLTQLKAKKLKGFAQLERAPYGEVLARVSKRS
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatgacattcgcgatacgttacaccatatctttggttttgaggcattacgccaa
ggccaacagcaagtcgtcgatgcggtactgactggccattctgcggccgccattttccca
actggctctggtaaatctctttgttatcaattacccgctttgcacctcccccacttaact
ctggtggtctcaccgctcattgccttaatgaaagatcagttggcttttctgcatagcaaa
ggtattgctgcagcagccatcgaatctggccaaagcaaagaacaaacacaggcgattatg
caagcggttaatgccggggaaataaaaatactgatgatctctgtcgagcgcctcaagaac
gaacgtttccgacagttcatcgcccaagtaccgatctcattactggtagtggatgaagca
cactgtatttcagagtgggggcataatttccgcccggattacctcaaacttccgagctat
caagcgacattaaacattccacaagttctgctgctgaccgccactgcaacagaaaatgtg
gtagcagacatgcaacgcaaatttgccatcaaaaaggacaatgttgttgtcaccgggttt
tatcgcgccaatcttgatctccacgtgaccccttgtcgcaatgaagacaaagcagacgca
ctgctgaaaatagtacaacaggcccctaacgccccaaccattgtctatgtcacgttgcaa
cataccgcaagtcaagttgctaccctactgcaagacgaaggcatacgcgcttcagcctat
catgccggattggataacgagttgcgtagcacgatacaaacacagtttatgcaaggccaa
ctggactgtattgtcgcaaccatcgcttttggaatgggggtagataaagccgatattcgc
cgagtaatccatttcgacttacccaaatcgattgaaaactacgcccaagaaatcggtcga
gccggtcgagatggccagaagtccgattgcatcgtcttggccaatcaaagcgggttaagc
acactggaaaatttcatttatggcgatacgcctgaacgagatgacatcagctcggtgatc
caacaaatacaagcctctggtgaacgatgggaggtgatcatcgcccgcctttctaacgat
accaacattcgccaactgccgctaaagacactattggtataccttgaaatggctggtctc
atcgagcccatgtacgcctattttgctgagtatcgtttcaagtttcttcgtcctgccagt
gaaattgtgcagcgctttcagggtgaacgaggcgcctttttgcaggctgtttttgattgt
tctccacaagcaagggtctggtgtcaaaccgatttcgaggccctttggcatcgctatcat
gccgaacggtcacgttgtgtggctgcgttagattaccttcatcaacaaggctggatagaa
ctggaaagtaagcaaatgacggacgtgtttgcggtaaagccgattgagtattccgcagaa
gatctcaccgagcagatttatcaactcttcaaaaacaaagagcaaagtgatgtcgaacgg
atccatcatatgctccacttttttgaatcaggtgagtgcctcagtcataagctcgcgcac
tacttttccgatcataacgcaccacagcaatgtggccactgctcagcatgccgaggccag
caagccacccttcccaaagaaatgctgacggacattcctcagcaagcgcttgatgaatgg
attgctcagttgcagagtcaaacctcacagccgctgagtgcagagctcatcacgcgtttc
ctttgtgggatcagcacacctaagctcactcaactaaaagcgaaaaagttgaagggattt
gcgcagttggaacgcgcaccttatggagaagtactcgcgcgtgtcagtaaacgaagctaa
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