Vibrio vulnificus MO6-24/O: VVMO6_01219
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Entry
VVMO6_01219 CDS
T01415
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvm03019
]
VVMO6_01219
Enzymes [BR:
vvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VVMO6_01219
Messenger RNA biogenesis [BR:
vvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VVMO6_01219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
WHD_HA2
AAA_22
ResIII
T2SSE
nSTAND3
NACHT
SLFN-g3_helicase
nSTAND_NTPase5
PhoH
AAA_30
Zeta_toxin
AAA_25
DUF6145
TsaE
NTPase_1
NAT10_TcmA_helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADV86241
LinkDB
All DBs
Position
I:1365506..1369438
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AA seq
1310 aa
AA seq
DB search
MTSSQPNTESHASEQKAQANSAASLRKALSQCLIKDRFRLSKRIAGASKINKESARNAVF
DEIALDIAKSMMEVEQRSRYQPKIEYPEILPVSQKKDDIADAIAHHQVVIVAGETGSGKT
TQLPKICAELGRGKFGLIGHTQPRRLAARSVANRIAEEMETQLGDFVGYKVRFNDQISEN
TQIKLMTDGILLAEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVII
TSATIDPERFSNHFGGAPIIEVSGRTYPVETRYRPLGGETEDDRDQLEGIFDAVDELCDE
GLGDILIFMNGEREIRDTADALAKRKLKDTEIVPLYARLSAGEQNKIFQPHTGRRIVLAT
NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVQEGIC
IRLYSEDDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNILDGVRL
LEELGAINSNAKDPKKRLTAVGKQLARLPIDPRLARMVLEAPRFGCLKEVMIIAAALSIQ
DPRERPSDKQQSADDKHRRFYHEDSDFLTFVNVWNHIQKQQKALSGNQFRRQCKDDYLNY
LRVREWQDVYFQIHQSMREMEFKLNSEPGSYDAVHSAILTGLLSHIGMKDQEKNEYHGAR
NARFHIFPGSGLFKKQPKWVMSAELVETSKLWGRIIAKIQPEWIEPLAKHLIKRSHSEPH
WSKKQAAVMAYEKVMLYGIPIVPKRLVNYGNIDASVSREIFIRSALVEGDWETKHAFFKQ
NRKLLLEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDTWWKQASKKEPELL
NFEKEMLFKGDASHVTDLDYPNFWHQNGLKLKLSYQFEPGDDSDGVTVHIPLPILNQIDP
AGFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLSRVTAMEMPLLDALEKELR
RMTGATVLREDWKLDQVPDHLKVTFRAVDERNRKLKEHKDLHELKESLKEKVQETLSKVA
DDDIEQQGLHTWSFGELPQVYQQKRGGYQVKAFPALVDNKDSVEIKLYETEQEQISAMKA
GQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEEQGGLV
WEPEKFEALKEHVRAELGDTVVDIAKQVETILTTAFNINKKLKGKIDFTMAFALSDIKAQ
IEGLIFKGFATECGWKRLPDILRYMKAIERRMEKLPIDPNKDRLHMLKIESVVKDYKELL
NKIPKGLAVPENVKEIRWMIEELRVSFFAQQLGTPYPVSDKRVKNAIEAC
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcgtcacagccaaatacagaatcccatgcttctgagcaaaaggctcaagcaaac
agcgccgcgtcattacgcaaggcgctcagtcagtgtttgatcaaagatcgctttcgtctg
agtaagcgcattgcaggtgccagtaaaattaataaagaatcggcacgcaacgcggtgttt
gatgagatcgcactggacatcgccaaatccatgatggaagtggaacagcgcagccgctat
caaccaaaaattgagtacccagaaatcctgcctgttagtcagaagaaagatgacattgca
gacgccattgctcatcaccaagtggtgattgtggcgggtgaaacgggctcaggtaaaacc
actcagctaccaaaaatctgcgccgaattaggccgtggtaagtttggtttgattggccat
actcagccacgccgcttagcggcacgctcggtggccaatcgcattgccgaagagatggaa
acgcaactgggggatttcgtcggttacaaagttcgatttaacgatcaaatctctgaaaac
actcaaattaaattgatgacagacggtatcttgctggccgagatccaacacgaccgtttc
ctcaatcaatatgacaccatcatcatagatgaagcgcacgagcgcagcctgaatatcgat
tttatcttgggttatttgaaagagttgctgccacgtcgtcctgatctgaaagtcatcatc
acgtcggcaaccattgacccagagcgattctccaaccactttggcggcgcgccgatcatt
gaagtgtcgggacggacttatcctgtggaaacgcgctaccgtccgttaggtggcgaaacc
gaagacgatcgtgaccaacttgaaggcatctttgacgcggttgacgagctgtgcgacgaa
ggcttgggcgacattcttatcttcatgaatggtgagcgtgaaattcgcgataccgcagat
gcgctggccaaacgtaagctcaaagatactgagattgtgccgctctacgcgcgcctttcc
gcgggcgaacaaaataaaatcttccagccgcatactggccgccgcattgtcttagcgacc
aacgttgctgaaacctcgttaaccgtgccgggcatcaagtacgtgattgaccctggtacc
gcgcgtattagccgctacagctaccgtaccaaagtacaacgtctgcccattgagccggtt
tctcaagccagtgccaaccagcgaaaaggtcgttgtggtcgtgtgcaagaaggtatctgt
attcgtctctactctgaggacgatttcaattcgcgccctgagtttaccgatcctgaaatt
ctgcgcaccaacttagcgtcggttatcttgcagatgaccgcgttgggccttggcgatatt
gaagcattcccatttgttgaagcgccagataaacgcaatattcttgatggtgtacgcttg
cttgaagagttgggtgccatcaacagcaacgccaaagatccgaaaaaacgcctcaccgcg
gtgggtaaacagttggctcgtttgccgattgaccctcgcttagcgcgcatggtgttggaa
gcgccaagatttggttgtttgaaagaagtcatgatcattgcagcggccttgtcgattcaa
gatccgcgtgagcgaccttcagacaaacaacaatcggcagatgataagcatcgtcgtttc
taccatgaagattctgatttcctcacctttgtgaatgtgtggaatcacattcagaagcaa
caaaaagccttgtcgggcaaccagttccgtcgtcagtgcaaagacgattacctcaactac
ttgcgtgtccgtgagtggcaagatgtttacttccaaatccatcaatcgatgcgtgagatg
gagttcaagctcaatagtgaacccggttcttacgatgcggtgcacagcgcgattttgact
ggcctgttatcgcatattgggatgaaagatcaggagaaaaatgagtatcacggcgcacgc
aatgcccgtttccatattttccctggctctggtctgtttaagaaacagccaaagtgggtg
atgtcggcagagctggtagaaacctcgaaactgtggggccgaattattgccaagattcaa
ccagaatggattgaaccactggcgaagcatttgattaagcgtagccacagcgagccccat
tggtcgaagaaacaagcggccgtgatggcgtacgaaaaagtgatgctctatggcattccg
attgtgcctaagcgcttggtgaattatggcaatatcgatgcgtcagtgagccgtgagatc
ttcattcgcagtgcgctggtggaaggggattgggaaaccaaacacgctttcttcaaacaa
aaccgtaaattgctgctcgaagtggaagagctggagcacaaatctcgtcgtcgcgatatt
ttggtcgacgatgaagagctgttccaattttacgatcaacgcgttggtacggaagtggtc
tctggacgccatttcgacacctggtggaagcaagcatcgaagaaagagcctgaactgctg
aactttgaaaaagagatgttgttcaaaggcgatgcaagccacgtgacggatttggattac
ccgaatttctggcatcagaatggcttgaaactcaagttgagctaccagtttgagccgggt
gacgacagcgacggcgtcacggtgcacattccattgccgattttgaaccaaattgatccg
gcgggcttcgattggcaaatcccgggcttgcgtcatgaattggtggtgagcttgattaag
tcgctaccgaagacgctgcgcaaaaactttgtgcctgcgccaaattatgccgatgcattt
ttatcgcgcgttactgcaatggaaatgccgttgctcgatgctttagagaaagagctacgc
cgtatgaccggggcgacggtgctgcgtgaagattggaaactggatcaagttcctgaccat
ctgaaagtgactttccgtgcggttgatgaaagaaatcgtaaactgaaagagcacaaagat
cttcatgagttaaaagaaagcctaaaagagaaggtgcaagaaaccttatcgaaagtggcg
gatgacgacatcgagcaacaaggcttacatacatggagctttggcgagttgccacaggta
tatcagcagaaacgtggcggttatcaggttaaggcgttccctgcgctggttgacaacaaa
gacagcgtagaaatcaagctctacgaaaccgagcaagagcagatcagtgcaatgaaagcc
ggtcaacgccgtttgatcttgttgaatgtgccatcgccgattaagtatctgcatgcgaac
ttgccgaacaaatcgaagctgggcctgtactttaacccgtatggcaaagtgcttgatttg
atcgacgactgcattgcttgtggcgttgacaagctgattgaagagcagggcggcttagtt
tgggagccagaaaaatttgaagcgttgaaggaacacgtgcgcgcagaattgggcgacacg
gtggtggatatcgccaagcaagtggaaacgattttgaccacggccttcaacatcaacaaa
aagctcaaaggtaagattgatttcaccatggcatttgctctgtcggacatcaaagcgcaa
atcgaaggtctgatcttcaaaggctttgccacggaatgtggttggaaacgactgccagac
atcttgcgttacatgaaagcgattgagcgtcgaatggaaaaactgcctatcgacccgaac
aaagatcgcttacatatgttgaagattgagtcggtagtcaaagactacaaagagctattg
aacaagattccgaaaggattagcggtaccggaaaatgtgaaagagattcgttggatgatc
gaggagctgcgagtcagtttcttcgctcagcagctcggaacaccttatccggtctccgat
aaacgagtaaaaaacgctatagaagcttgctaa
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