Vibrio vulnificus MO6-24/O: VVMO6_02172
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Entry
VVMO6_02172 CDS
T01415
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vvm03016
]
VVMO6_02172
Enzymes [BR:
vvm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VVMO6_02172
Transfer RNA biogenesis [BR:
vvm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VVMO6_02172
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ADV87194
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All DBs
Position
I:complement(2338867..2340039)
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AA seq
390 aa
AA seq
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MPAEFQGWHFYFQSDSERRVNYQIITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQL
GLIQLFDGDTLSLIDPTVLTDMSAFTELLNDASVMKVLHACGEDLEVFHNAFGAIPVPMV
DTQIMAAFLGHGLSTGFAALVEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLP
LYEILLEKVMEAGWWQAAQQESELQASKRVKTPNADNAYLDIKGAWQLKPRELAILKPLA
TWRMQEAIRRDLALNFVFKEHDLLTVARLGLTSFKRMEEEGMDVRSVQRHGNRIAAIVKS
ARETDPEDYPAPIERLMDLPGYKQLFKKLKDEVTHASKATGLVSEFLASKKQTNQLISWV
WKHQRDQNRLPDLMQGWRLDILGEKMNKLI
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgaattccaaggctggcatttttattttcaaagcgatagcgagagacgagtg
aattaccaaattattaccgaaaaccaagacctagttagggtatgcagtaaagcacgcgaa
gcagacgttgtgatgttggataccgagtttgtccgcacccgaacgtattacccacaattg
ggcttaattcagctttttgatggtgacaccctctcgctgattgatccaacggtgctgact
gatatgagtgcgtttactgagttgcttaacgatgcctcggtaatgaaagtgcttcacgcg
tgcggtgaggatttggaagtgttccacaatgcgtttggtgcgatacccgtgccgatggtg
gatacgcaaatcatggccgcgtttttgggtcacggtctatcgacgggctttgccgcattg
gtcgagcagtaccttaacgtggaactggataagagtgagtcgcgcacggactggttggct
cgccctctgagtgacaaacagcttgagtacgccgcggcagatgttcactacttgttgccg
ctgtacgagatcttgttggaaaaagtgatggaagcgggctggtggcaagcggctcagcaa
gagagcgaactgcaagcaagcaagcgtgtaaaaacgccgaatgccgacaatgcttacctc
gatatcaaaggggcttggcagcttaagccaagagagctagcaatactcaaaccgcttgcg
acttggcgtatgcaagaggcgattcgtcgtgacttagcgttgaactttgttttcaaagaa
cacgacttactcacggtggcacgtttaggtctgacgagctttaagcgcatggaagaagag
gggatggatgtccgctcagtacagcgtcatggcaatcgcattgctgcgatagtgaagtcg
gcgcgtgagactgatcctgaggattatccagcaccaattgaacgcttgatggatttgcca
ggttacaaacaactgtttaaaaaactgaaagacgaagtcactcacgcttcgaaagcgaca
ggtttagtgagcgagtttttagcgtcgaagaagcagactaatcaactgatcagttgggta
tggaaacatcagcgcgatcaaaatcgcctgccagacttgatgcaaggttggcgcttagac
attctgggcgaaaaaatgaacaagctaatttag
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