Vibrio vulnificus MO6-24/O: VVMO6_02918
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Entry
VVMO6_02918 CDS
T01415
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Pathway
vvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VVMO6_02918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvm03019
]
VVMO6_02918
Enzymes [BR:
vvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VVMO6_02918
Messenger RNA biogenesis [BR:
vvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VVMO6_02918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ADV87940
LinkDB
All DBs
Position
I:3127156..3128463
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AA seq
435 aa
AA seq
DB search
MKKTHITEQKFADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYG
GESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSN
EDKMALLQTLIEEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILE
QFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPAIEEYIEHTIPVSDYDSSALIQDLPAPVRTPSARNQQRRTNTGGARSGDRK
SNNRRPRQPRQHKEA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttgggtttaaatccccaagtt
gttgaaggattggagaaaaaagggtttgagttttgtacccctatccaagccttggcgttg
ccggtactgctctccggccaagacatcgcaggccaggcccaaaccgggactggtaaaacg
ctcgcgtttcttactgctacctttaaccatttgttgaccacacctgcacacgaaggccgt
cagccaacccagccacgtgccatcatcatggcgccaacacgtgagttagcgattcagatc
tacaacgatgctgagcctctaatcgcaagtactggcatcaaagcagccctcgcttacggc
ggtgaaagctatgataagcagttagccaagctccaaggtggcgttgacgttctgatcggc
actactggtcgtattatcgatttttacaagcagcgtgtgtttaacctcaataacattcaa
gcggttgtgcttgatgaagccgatcgcatgttcgatttgggtttcattaaagacattcgt
ttcttgttccgccgtatgccagcaccacaagagcgtctgaacatgttgttctcagcaacg
ctttcttaccgcgtgcaagaattggcgtttgagcacatgcataacccagagcacgttgtg
gttgagcctgaacaaaaaactggccaccgtattcaagaagagctgttctacccttctaat
gaagataaaatggcgctgctacaaacactgattgaagaagaatggccagatcgcgcgatc
attttcgctaacactaaatataagtgtgaatccatctgggctcatcttgctgccgatggt
caccgtgttggcctgctcactggtgatgttccacagaagaaacgcgaaaagattcttgag
caatttactcaaggttctgtagatctcctcgtggcaaccgacgtggcagctcgtggcctg
cacataccgcaagtaacgcatgtctttaactacgatttacctgatgactgtgaagactac
gttcaccgtattggccgtactggccgtgctggtgcaagtggccattcgatcagctttgct
tgtgaagattacgccatcaacttgccagcaattgaagaatacattgagcacaccattccg
gtctcggattacgattcaagcgccttgatccaagatctaccagcgccagtccgtacacct
tctgcgcgcaatcagcagcgccgcacgaacactggcggtgcacgttcaggtgatcgtaag
tcaaacaaccgtcgtccacgacaaccgcgtcaacacaaggaagcgtaa
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