Vibrio vulnificus MO6-24/O: VVMO6_03643
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Entry
VVMO6_03643 CDS
T01415
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vvm03016
]
VVMO6_03643
Enzymes [BR:
vvm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VVMO6_03643
Transfer RNA biogenesis [BR:
vvm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VVMO6_03643
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF2274
DUF7716
Motif
Other DBs
NCBI-ProteinID:
ADV88665
LinkDB
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Position
II:complement(760888..762882)
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AA seq
664 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGTIKATEKGFGFLEVDSKTSFFIPPAYMKKCMHGDKV
IAIIRTENEREVAEPQELVEQMLNRFIGRVKMFKGKLNVVPDHPQLKKMSLKAKTKKGLN
PQEFAEGDWVVGHLIRHPLKDDNGFFVEISEKITDADDKIAPWWVTLAENDLPNSEPAGI
DDWQIKDDADLERIDMTHIPFVTIDGESTKDMDDALYAKKNDAGDFELTIAIADPTAYIT
PDDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIEGEIRPALCCTVTVSKDGVIGD
DIQFFAANIKSHARLAYDNVSDWLETGSCEKWQPSEEIAAIVRDLYEFSQARAEWREKNA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANRLVEESMITANICAGKTLQAHFGTGVFNC
HAGFKPEKIADVVELVNPEGTLEFTAESIATREGFAALRRWLSKQETTYLDNRIRKFQTY
SEVSNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKALILNKEPVQKPDDSVGEELAL
HRKHHKIAERNVADWLYARTLADAPENQTLFTGEIFDINRAGMRIRLLENGAAAFIPGSL
IIDNKERIECNGDLGTVSIDKEVVYKLGDVLEVVLADVNQENRSLVAKPTQVFAELPVVE
ETQN
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccacttttagcccagcttaagcaacaaattcaggaaaatctgcca
aagaaagaaggcacgattaaagcaaccgaaaaaggttttggctttctcgaagtcgatagc
aagacaagtttctttattccaccagcctacatgaagaaatgtatgcacggtgataaggtg
atcgccattatccgcaccgaaaacgaacgagaagttgccgagccacaagagcttgttgag
cagatgctaaatcgcttcatcggtcgtgtgaaaatgttcaaaggcaaattgaatgttgtt
cctgatcatccgcaactgaagaagatgtctctcaaagccaaaacgaagaaaggtctaaac
cctcaagaatttgctgaaggcgactgggttgtcggccatttgatccgtcacccactaaaa
gatgacaacggtttcttcgtggaaatcagcgaaaaaattaccgatgccgatgacaagatc
gcaccttggtgggtaacgctggcggaaaacgacctgcctaactctgagcctgccggtatc
gacgattggcaaattaaagacgatgcggatcttgaacgtatcgacatgacacatatccct
tttgtgaccatcgatggtgagtcaacaaaagacatggacgatgcgctttacgcgaagaaa
aacgacgctggcgattttgaattgacgattgccattgccgatccaaccgcttacatcaca
ccagatgatgaaatggacaaggttgcacgtgagcgcggctttaccatttatcttccagga
cgcaatatcccgatgttgcctcgtgaccttgctgatgaactgtgttcgctaatcgaaggt
gaaatccgccctgccctttgctgcacagtgaccgtcagtaaagacggcgtgattggcgat
gatatccagttctttgcggcaaacatcaagtcgcacgcccgtttggcgtatgacaatgtc
tccgactggctcgaaacaggcagctgtgaaaaatggcagccaagcgaagaaattgcggcc
atcgtgcgtgacctgtatgaattctcacaagctcgcgcagaatggcgagagaagaatgcg
gtagtcttcccagatcgtcctgattaccgttttgagttgagtgaagataacgatgtcgtt
gcgattcacgcagacatgcgccgtagcgcaaaccgcttggttgaagagtcgatgatcaca
gccaacatttgcgcgggtaaaacgctgcaagcccatttcggcactggcgtatttaactgc
catgcaggcttcaaaccagagaagattgccgatgtagtggagctggttaacccagaaggt
acgttggagttcacggctgagtcgattgccactcgtgagggttttgctgcactacgccgc
tggttaagcaaacaagaaacgacttatcttgataaccgcattcgcaaattccaaacctac
agtgaagtgagcaaccagcctttgccacactatgcgatgggccttgatatctacgcaact
tggacgtctccaattcgtaaatatggcgatatgatcaaccatcgtatgcttaaggcttta
attctaaacaaagagcctgtgcaaaaaccggatgatagtgtcggcgaagagcttgctcta
caccgcaagcatcacaagattgcagaacgtaatgttgcagactggctgtatgctcgcact
ctagcagacgctccagaaaatcaaacgctgtttaccggtgaaatcttcgatattaaccgt
gctggtatgcgcatccgtttacttgaaaatggcgctgcggcattcatccctggttctctt
attattgataataaagaaagaattgagtgcaatggtgacctaggtactgtttctatcgat
aaagaagtggtatacaaactgggagacgttcttgaagtcgtgttagctgacgttaaccag
gagaacagaagcctggttgcgaaacctacccaagtattcgctgaattacccgtggtagaa
gaaactcagaattaa
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