Vibrio vulnificus MO6-24/O: VVMO6_03644
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Entry
VVMO6_03644 CDS
T01415
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vvm
Vibrio vulnificus MO6-24/O
Pathway
vvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VVMO6_03644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvm03019
]
VVMO6_03644
03009 Ribosome biogenesis [BR:
vvm03009
]
VVMO6_03644
Enzymes [BR:
vvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VVMO6_03644
Messenger RNA biogenesis [BR:
vvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VVMO6_03644
Ribosome biogenesis [BR:
vvm03009
]
Prokaryotic type
rRNA helicases
VVMO6_03644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
ADV88666
LinkDB
All DBs
Position
II:763260..765185
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AA seq
641 aa
AA seq
DB search
MQDSVIQFSDLELNDAILSALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAF
SLPLLNKLDLAQRKPQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMR
ALKNGAHVIVGTPGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSS
AQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVAQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAAARLDKLAAELQADIEHKALDKFAELIEKLEERLEIDSSV
LAAILLKRQQGKRPLFYIGEDPMIEAIERDKQNRRERRENRDNGGRRESFNSNQDWDTYQ
LQVGREQGVQVKDIVGALANELGLGKGSIGAIKLAQEHTFVQLPKAMSTQAASKLRKLRI
RQKEVGAVVCDFNDFNENRGRRDGARREGGFREGGRREGGYRGNREGGREGGYRGNREGG
REGGFRGNRDGERRFDRNRGGDHRGNHRGERGHGRPRRNED
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgtaattcaattcagcgatttagagctgaatgatgctatcctttccgct
cttgatggtatgggctttgtttcgccaacaccgattcaagcagctgcgattcctcatcta
ttacaaggtgtggatgcgctaggtaaagcacaaacgggtacgggcaaaacggcagcattt
tctctgcctcttctcaacaaacttgatctcgcacagcgtaaacctcaagcaatcgtactg
gctccaactcgtgagctagcgatccaggttgcggcagagatgaaaaaccttggtcaaaac
atccgtggtttgaaagtgctagagatctacggtggtgcatctatcgttgatcaaatgcgt
gctcttaagaatggcgctcacgttatcgtgggtactccaggccgtgttcaagaccttatc
aaccgcgaacgcctagacttaggtgaagtgcatactttcgttcttgatgaagcagacgaa
atgctaaacatgggtttcgttgacgatgtaacggaaatcatggagcacgctccatcatct
gcgcaacgcgtactgttctctgcaactatgcctccaatgttgaaaaacattgttgagcgc
ttcttgcgtgatccagttactgtcgacgttgcaggtaaaaaccacactgtagataaagtt
gcacagcagttctgggttgttaaaggcgtagaaaaagatgaagcaatgtctcgtcttcta
gaaacagaagagacagatgcatcaatcgtattcgtacgtactcgtcaagacactgagcgt
ctagcggattggctatgtgcacgcggcttcaaagcagcagcactacacggtgatattcct
cagtctttacgtgagcgcacagttgatcacatcaaacaaggtgttatcgatattcttgtt
gcgacagacgttgttgctcgtggtctagacgtgccacgtattactcacgtgtttaactac
gacatcccattcgatgttgagtcatacatccaccgtatcggtcgtactggccgtgcagga
cgtcaaggtaaagcgatccttcttgttcgcactaaccaaattcgcatgcttcgtactatc
gagcgtgttactaagtcttctatggaagagatccaactgccacttcgtgacaaagttgca
gctgcgcgtctagataaacttgccgctgagcttcaagctgacatcgagcataaagcgctt
gataagttcgcagagctgatcgaaaaactagaagagcgtctagagatcgattcaagcgtt
ctagcagcgattctattgaagcgtcagcaaggcaaacgtccgctattctacattggcgaa
gacccaatgatcgaagcgattgagcgcgataagcaaaaccgtcgtgagcgtcgtgaaaat
cgtgacaatggcggtcgtcgtgaaagctttaacagcaaccaagattgggatacttaccaa
cttcaagttggccgtgagcaaggtgttcaagtgaaagacatcgtaggcgcactggcaaac
gaacttggcttaggtaaaggttcaattggtgcaatcaaactggctcaagagcacacgttt
gttcagctaccaaaagcgatgagcacacaagctgcaagcaaacttcgtaaactgcgtatt
cgtcagaaagaagtgggtgccgttgtttgtgatttcaacgatttcaacgaaaaccgtggt
cgtcgtgatggtgctcgccgtgaaggtggtttccgcgaaggcggtcgtcgtgaaggcggc
taccgtggcaatcgtgaaggcggtcgtgaaggtggctaccgcggtaaccgtgaaggtggt
cgcgaaggtggtttccgtggtaaccgtgacggtgagcgtcgttttgaccgcaaccgtggt
ggtgatcaccgtggtaaccatcgtggtgaacgtggtcacggtcgtccacgtcgcaacgaa
gactaa
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