Vicia villosa (hairy vetch): 131601169
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Entry
131601169 CDS
T09680
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03013
Nucleocytoplasmic transport
vvo03015
mRNA surveillance pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131601169
09122 Translation
03013 Nucleocytoplasmic transport
131601169
03015 mRNA surveillance pathway
131601169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131601169
03041 Spliceosome [BR:
vvo03041
]
131601169
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131601169
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131601169
Spliceosome [BR:
vvo03041
]
Complex C
Other components
EJC/TREX
131601169
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131601169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
131601169
NCBI-ProteinID:
XP_058728915
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Position
LG5:3441709..3448687
Genome browser
AA seq
426 aa
AA seq
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MGELKETEVYEEELIDYEEEDEKALDSAKPATETVKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLC
HTRELAYQICHEVERFSTYLSDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALT
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDT
STYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaattgaaagaaactgaggtttacgaggaagagctcatcgactatgaagaggag
gatgaaaaggctcttgattctgctaaaccagctactgaaaccgtcaagaaaggctacgtt
gggatccatagttcgggatttcgagacttcctgttgaaaccagagcttcttcgagccatt
gtagattcaggatttgagcatccttcagaagtgcaacacgaatgcatccctcaagcaatt
ttgggaatggatgtcatctgccaagcaaaatctggcatgggaaagactgctgtttttgtt
ctgtcaacacttcagcaaattgatcctgttcctggtcaggttgcagcacttgttctttgc
cacacaagagaattagcttaccagatttgccacgaagtggagaggttcagcacatatctt
tcagatatcaaagttgctgttttctatggtggtgttaatatcaaggttcacaaagatttg
ctcaagaacgaatgtccccacattgttgttggaacacctgggaggattcttgccctgact
agagataaagaccttggtttgaagaatgtgaggcattttatacttgatgagtgtgacaag
atgctggaatcactcgacatgagaagagacgttcaagagattttcaaattgactccacat
gataaacaagtgatgatgttttcagctacactcagcaaagagattcgacctgtttgcaag
aagtttatgcaagatcccatggaaatttatgtagatgatgaggccaaattgactcttcat
ggtcttgttcagcactacattaaattacaagagccagagaagaatcgtaagctgaatgac
cttcttgatgctcttgacttcaaccaagttgttatttttgttaaaagtgttagcagagct
gcagaattgaacaagttgcttgttgagtgtaacttcccatcaatatgcatacattctgga
atgtcacaggaagaaagattgaagcgatacaagggcttcaaagaggggaagcaaaggatt
cttgtggcaacagatttagtaggaagggggattgatatagaacgtgttaatatagtcatc
aactatgacatgcctgattccgctgatacctatcttcacagggtgggaagagctggtaga
tttggtactaaggggcttgcaattacctttgtgtcttctgctggtgactctgaagttctt
aatcaggtgcaatctaggtttgaggttgatattaaggagcttcctgaacaaattgacacc
tccacatacatgcctaattga
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