Vicia villosa (hairy vetch): 131602569
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Entry
131602569 CDS
T09680
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03015
mRNA surveillance pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131602569
09123 Folding, sorting and degradation
03018 RNA degradation
131602569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131602569
03041 Spliceosome [BR:
vvo03041
]
131602569
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131602569
mRNA cycle factors
Stress granule specific factors
131602569
Spliceosome [BR:
vvo03041
]
Complex C
Other components
Complex C specific factors
131602569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_3
RRM_RdRP1_2
RRM_Nup35
RBD_DEAH11
RRM_7
RRM_MARF1
PABC_AtC3H46
RRM_8
PH_35
Motif
Other DBs
NCBI-GeneID:
131602569
NCBI-ProteinID:
XP_058730698
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All DBs
Position
LG5:133572508..133578131
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AA seq
656 aa
AA seq
DB search
MAQVQVQPQNAMTGPNGGAAAAAAAAAAGGNQFVTTSLYVGDLDVNVTDSQLYDLFNQLG
QVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRK
SGQGNIFIKNLDKAIDHKALHDTFSTFGSILSCKVAVDGSGQSKGYGFVQFDSEEAAQKA
IEKLNGMLLNDKQVYVGPFLRKQERETTTDRAKFNNVFVKNLSETTTDDELKQIFGEFGT
ITSAVVMRDGDGKSKCFGFVNFESTDDAARAVDALNGKKIDDKEWYVGKAQKKSEREHEL
KQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSYGTITSCKVMRDPNGISRGS
GFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVA
PRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGPVPNFFVPMVQQ
GQQGQRPGGRRGGAVQQSQQPVPLMPQQMLPRGRMYRYPSGRGMPDGPMPGVAGGMYSVP
YDVGGMPLRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGM
LLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDSLVS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcaggttcagcctcagaatgcgatgacgggtcctaacggtggtgccgcg
gcggcggcggctgcggctgcggctggtgggaatcagtttgtgacgacttcgctttacgtt
ggagatcttgatgtcaatgttacggattctcagctttatgacctttttaatcaattgggt
caggttgtgtctgttagggtttgcagggatttgaccactaggaggtcgcttggttatggt
tatgttaactacagtaaccctcaagatgctgccagagcattggatgttctgaacttcact
cctctgaacaacaggcccattcgtattatgtattcacaccgtgatcccagtatccgcaaa
agtggtcaaggaaatatttttattaagaatttggacaaggcaattgaccataaggcattg
catgataccttttctacatttgggagtatcctttcttgcaaggtagctgtggatggatct
ggccaatcaaaaggctacggctttgttcaatttgatagtgaggaggctgctcaaaaagct
attgaaaagcttaatggtatgctgttgaatgataagcaagtttatgtgggacccttcctt
cgcaagcaagagagggagactacaactgacagggcaaaattcaacaatgtttttgttaag
aatctatctgaaacaaccaccgatgatgagttgaagcagatttttggagaatttggaaca
attactagtgctgtagtaatgagggatggggatgggaaatcaaagtgttttggatttgta
aactttgagagtaccgatgatgctgctagggctgttgatgctcttaatgggaagaaaatt
gatgataaggaatggtatgttggaaaagctcaaaagaaatctgaaagggagcatgaactg
aagcaaaaatttgagcagagcatgaaggaagctgctgataagtatcaaggggcaaacttg
tatgtcaaaaatttggacgacagcattgttgatgacaaacttaaggagctgttctcctct
tatggcacaattacctcttgcaaggtaatgagagaccccaatggcataagtcgaggatct
gggtttgttgcattctctactcctgaggaggcatctagagcactgttggagatgaatggc
aaaatggtggtaagcaagcctctgtatgtgactctggcccagcggaaggaagatagaaga
gctaggctgcaggcacaatttgctcaaatgcgtcctgttgcgatgcccccatctgttgct
ccccgtatgcctatgtatccccctggtggtccaggtatgggtcaacaaatattttatggt
caaggccctcctgccatcattccttcccagcctggatttgggtatcaacaacaacttgtg
cctggaatgaggcctggcgggggtcctgtgccaaatttctttgtcccaatggttcagcag
ggacagcaagggcagcgtcctggtggaagacgtggaggtgcagtccagcagtcccagcag
ccagttcctcttatgccacagcagatgcttcctagggggcgtatgtatcgttatccttct
ggtaggggcatgcctgatggtcccatgcctggagttgccggaggcatgtattctgttcct
tatgatgtgggtgggatgccccttcgtgatgcatcactttcacagcaaattcccattggt
gctttggcttctcatctggctaatgcatctccagagcagcagaggacgatgctgggtgag
aatctttacccacttgtggaacagttggagcctgacaatgctgccaaagttactggcatg
cttctggagatggaccagactgaagttttgcacttgcttgagtcaccagaagccctgaag
gccaaggtggcagaggcaatggacgtccttaggaatgttgcacagcagcaggctggaggc
gctgctgatcagctgtcttcattgtcacttaatgacagccttgtttcttaa
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