Vicia villosa (hairy vetch): 131603764
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Entry
131603764 CDS
T09680
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131603764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131603764
03041 Spliceosome [BR:
vvo03041
]
131603764
03009 Ribosome biogenesis [BR:
vvo03009
]
131603764
03016 Transfer RNA biogenesis [BR:
vvo03016
]
131603764
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131603764
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131603764
Spliceosome [BR:
vvo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131603764
Complex C
U4/U6.U5 tri-SnRNP related factors
131603764
Ribosome biogenesis [BR:
vvo03009
]
Eukaryotic type
Pre-60S particles
Helicases
131603764
Transfer RNA biogenesis [BR:
vvo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131603764
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
DUF7204
ATPase_2
DUF7579
Motif
Other DBs
NCBI-GeneID:
131603764
NCBI-ProteinID:
XP_058732174
LinkDB
All DBs
Position
LG5:complement(166966575..166976059)
Genome browser
AA seq
976 aa
AA seq
DB search
MEQEPSTLGKRRESETTNTGDASSKPKKPRSLERTCVHEVAVPTNYTSTKDESLHGTLSN
PLHNGAMAKTYSFTLDPFQQVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRV
IYTSPLKALSNQKYRELSQEFKDVGLMTGDVTISPNATCLVMTTEILRGMLYRGSEVLKE
VAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCH
VVYTDFRPTPLQHYVFPNGGNGLYLVVDENEQFREDNFVKLQDTFSKQKVGDGFRGGKSN
GRHGKGGSAGAGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMAMSKLDFNTQEEKDT
VEHVFRNAVLCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKAL
FATETFAMGLNMPAKTVVFTAVKKWDGDSNRYIGSGEYIQMSGRAGRRGKDERGICIIMI
DEEMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKA
LPDMGKRVSMLEQEVALLDAAGEAEVSDYHKLKLELALLEKKMMSQIIRPEMILYFLVPG
RLIKVREGGTDWGWGVVVNVVKKPVGGYIVDTLLHCAPSSNENSMRSKPCPPRLGEKGEM
HVVPVQLPLISALSKLMICVPPDLRPLEARQSILLAVQELGNRFPQGLPKLNPVKDMDIR
DSEIVELVNQIEELEKKLLGHPMHKVQDVDQIKSFERKAEANHEIQHLKAKMRDSQLQKF
RDELKNRSRVLKKLGHIDADSVVQLKGRAACLVDTGDELLVTELMFNGTFNDLDHHQVAA
LASCFIPVDKSSEQIQLRSELARPLQQLQDNARRIAEIQHDCKLEVNVNEYVESTVKPFL
MDVIYSWSKGSSFADVTQMTDIFEGSIIRATRRLDEFLNQLRAAAEAVGEVDLEKKFAAA
SESLRRGIIFANSLYL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagaaccatccacactcggaaaacgaagagaatccgaaaccaccaacaccggc
gacgcttcttcaaaaccaaagaaaccccgcagtttagaacgcacatgcgtccatgaagtc
gcagttccaaccaattacacctcaaccaaagatgaatccctccacggaaccctctccaat
cctctccacaatggcgccatggcgaaaacctactccttcacgctcgaccccttccagcaa
gtctcaatcgcgtgcctagaacggaacgagtccgttttggtttccgctcatacttcagcc
ggaaagactgcgatcgcggaatacgcgattgcaatgtcgtttagggataaacagagagtt
atctatacttcaccgttgaaagctcttagtaaccagaaatacagagagcttagccaggag
tttaaagatgtagggttgatgactggggatgttacgatctctccgaatgcgacgtgtctt
gttatgacaacggagattcttagggggatgttgtatcgtggttcggaggttttgaaggaa
gttgcttgggttatatttgatgagattcattatatgaaggatcgtgagagaggtgttgtt
tgggaggagagtataatctttttgccgcctgctattaagatggtgtttctttctgctact
atgtcgaatgctacggagtttgcggagtggatttgtaatatacataagcaaccttgtcat
gttgtgtatactgattttaggccgactccgttgcagcattatgtttttcccaacggtggg
aatgggttgtatttggttgtggacgagaatgaacagtttagggaggataattttgttaag
ctgcaggatactttttctaagcagaaagttggtgatgggtttaggggtggtaagtctaat
ggcagacatgggaaaggtggttctgccggtgctggttccgacatatacaaaattgttaag
atgatcatggaaaggaaattccaacctgtcatcatctttagcttcagtaggagagagtgt
gagcagcatgcaatggctatgtctaagcttgactttaatacccaagaggaaaaggataca
gtggagcatgtttttcggaatgcagtgctctgtctgaatgaagaagaccggagcttacct
gctatcgagctgatgttgccactacttcagcgaggaattgctgtccaccattctggcctt
ctccctgtcatcaaagaattggtcgagcttcttttccaggaaggtcttgtaaaggccctc
tttgctactgagacatttgcaatgggtttaaatatgccggcaaagactgttgtattcact
gctgttaagaagtgggatggtgatagtaaccgatatattggctctggtgaatatatacag
atgagtggaagggccgggcgtcgtggcaaagatgagcgtgggatttgtatcataatgatt
gatgaggagatggaaatgaataccctcaaagacatggttctgggtaaacctgctccttta
gttagtacattcaggcttagctactactcaattttaaatttgatgagccgtgcagaaggc
caattcactgccgaacatgtgataagaaactcatttcatcaatttcaatatgaaaaggcc
ttacctgatatgggaaaaagggtatctatgctggagcaggaagtagccttgcttgatgct
gcaggagaggctgaagtatctgactatcataagctgaaattagaattagctcttcttgag
aagaagatgatgtcgcaaataataagacctgaaatgattctttattttcttgtccctggt
cgattgattaaagtaagagaaggcgggacagattggggctggggtgttgtagtcaatgtt
gttaagaaacctgttggtggttatatagttgacactttacttcattgtgcacctagttca
aacgaaaacagtatgcggtcaaaaccatgtccaccgcgccttggagagaaaggtgaaatg
catgtggttcctgttcaattaccattaatctctgcccttagtaaactaatgatatgtgta
cctcctgatctccggcccttggaagctcggcaaagtatactccttgctgttcaggagctg
ggcaatcgttttcctcaaggtcttccaaagctcaaccctgtaaaggacatggatatacgt
gattcagagatagtagaacttgtcaatcaaatagaagagcttgagaaaaagttgcttggt
catcctatgcataaggttcaagatgtagatcaaattaagagctttgagaggaaagctgaa
gcaaatcatgaaattcaacacctgaaagcaaaaatgcgagactcccagctgcaaaaattc
cgggatgaacttaaaaatcgctctcgagtcttaaagaagcttggtcatattgatgctgat
agtgtagttcaattgaaaggaagggctgcctgcttggttgacacaggcgatgaactcctt
gtcactgaattaatgtttaatggcacttttaatgatcttgaccatcatcaagttgctgct
cttgcaagttgttttataccagtagataaatcaagtgagcagatacaactgagatcagag
cttgcgagacctctacaacagcttcaagacaatgcgagaaggatagcagagatacaacac
gattgcaaattggaagtaaatgtgaatgaatatgtcgaatcaacagtaaagccattcttg
atggatgtaatatactcttggtctaagggatctagttttgctgatgttactcaaatgact
gacatcttcgagggcagtatcattagggctactagaaggcttgatgagtttttgaatcag
ttgcgtgctgctgctgaagcagttggagaagttgacttggagaagaaatttgcagcagca
agtgaaagccttcgacgtggtattatttttgccaattctctatacctgtga
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