Vicia villosa (hairy vetch): 131603907
Help
Entry
131603907 CDS
T09680
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131603907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131603907
03012 Translation factors [BR:
vvo03012
]
131603907
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131603907
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131603907
Translation factors [BR:
vvo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131603907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_16
AAA_19
Dicer_dimer
ATPase
Myosin_head
NPHP3_N
PhoH
Motif
Other DBs
NCBI-GeneID:
131603907
NCBI-ProteinID:
XP_058732350
LinkDB
All DBs
Position
LG5:complement(170931761..170947906)
Genome browser
AA seq
1181 aa
AA seq
DB search
MPLPMRIRAPVLPYSGIFRTAARHFLTVTSLTPTTTNLRIRLSTSLTAIHHRYGAPLRYR
TFALPLFHQQSSTYGRFAFHDVSSDESDLEFAPPHSQSRPQQQLGDSTLENIDSWRWKLT
MLLRNKDEQEVVSNEKKDRRDFLQLETLATRMGLYSRQYAKVVVFSKAPLPNYRPDLDDK
RPLREVTLPFGVHREVDTHLLAHLSHKATKRAGSLDDSLHQSRDDGSIPADEGIYGHPEP
TSHISVAKEKFLQRKSLQLRHQQQNWQESPEGQKMLEFRRSLPAFKEKDAFLKAVKENQV
IVVSGETGCGKTTQLPQYILESEIEAARGALCSIICTQPRRISAISVSERVAAEHGEKLG
ESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLI
VLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRAQFLEDILERTGYR
LTPYNQIDNYGQEKSWKMQKQAQSFKKRKSQIVSAVEDALEVADFKGYSLRTKESMSCWN
PDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLHAHPLLGDQSRVLLLACH
GSMSSSEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPSWISKAAARQRKGRAGRVQSGECFHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKS
LQLGSISEFLSSALQPPEALSVQNAVEYLKIIGALDENENLTVLGRKLSMLPVEPKLGKM
LILGAIFNCLDPILTVVAGLSVRDPFVVPADKKDLAESAKAQFAARAYSDHLALIRAYDG
WKDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFHLLKDIGLVGNNSETNNKWSNEEHM
LRAVICAGLFPGISSVVNKEKSIALKTMEDGPVLLYANSVNGSVPKIPYPWLVFNEKIKV
NTVFLRDSTGVTDSMLLLFGGNISKGGLDGHLKMLGGYLEFFMKPELAKTYSTLKRELEE
LIQKKLLDPMLDIQSQNELLSAVRLLVSEDNCDGRFVYGHQVLPQLKKAAKSKSGDGFEG
DNSKNQLQTFLSRAGHQPPTYKTQQLRNNQFRSTVIFNGLDFVGQPCSSKKLAEKSAAAE
AILWLKGDNTHSYGDMGHASVLLKKSNKKSRKKSFSDAKWG
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgccactaccaatgcgaattcgagcccccgtactcccatactccggcatcttcagaacc
gccgctcgtcatttcctaaccgtaacttccctaactccaacaaccacaaacctccgcatt
cgtctctcaacttccttaaccgccatccaccacagatatggcgcgcctctcagatacaga
acctttgctcttccgctttttcaccagcaaagttccacttacggccgtttcgcctttcac
gacgtctccagcgatgagtccgacctcgaattcgctcctcctcactctcaatcccgccct
cagcaacagttgggtgattcgacacttgaaaacattgactcttggagatggaaactcacc
atgcttcttcgcaataaagacgagcaagaagttgtgtctaatgagaaaaaggaccgtcgt
gattttctgcaactcgaaactttagctaccaggatgggtttatacagtcgacagtatgca
aaagttgtcgtgtttagcaaggcgcctttgccaaattatcgccctgatcttgatgataag
cgtccgttgagagaggtaaccttaccatttggtgttcatagagaagtagacactcatctt
cttgctcatctttcacataaggctacaaaaagagcaggctctttggatgattccttgcat
caatcaagggatgatggaagcattcctgctgatgaagggatttatgggcatccagaaccc
acgagccatattagtgttgccaaagagaaattccttcaacgaaaaagtctgcaactgcgt
catcaacaacaaaactggcaggaatctcccgaagggcaaaagatgcttgaatttcgccga
agtcttcctgcattcaaagagaaagatgcatttttgaaagccgttaaagagaatcaggtc
attgttgtctcgggtgaaactggttgtggtaaaactacacaacttcctcaatacatatta
gaatctgagattgaagctgcacgtggagctctatgtagcataatttgtactcagcctaga
agaatatctgctatatctgtttctgaaagagttgcagcagaacatggggaaaaattggga
gaatctgtcggctataaagttcggttggagggtatgagaggaagggatactcgtcttctt
ttttgcaccacaggtgtgttattgcggagactactcgtggatagaagtttaaaaggtgta
actcatgttattgttgatgaaattcatgaacgcggaatgaatgaagattttcttctcatt
gtcctgaaggatcttctccctcgtcgtcctgatttgagattaattttgatgagtgcaact
ttaaatgctgagcttttttcttcgtattttgatggtgccccaactatgcatatccctgga
tttacttttccagttcgagcacaatttcttgaggatattctggaaaggactggatatcgt
ttgactccttataatcaaattgataactatggtcaagagaaatcatggaaaatgcagaag
caagctcaatctttcaaaaaaagaaagagccagattgtttctgctgttgaggatgcatta
gaagttgcggactttaaggggtatagcctacgcactaaggagtcaatgtcctgctggaac
cctgactcaattggttttaaccttattgaacacgtgctttgccacattgttaagaatgaa
aggccaggtgctgttttggtttttatgactggttgggatgatataaactctttgaaggat
caactccatgctcatcctttattaggtgatcagagccgtgtattacttcttgcatgccat
ggctctatgtccagctcagagcagaaattaatatttgaaaatcctgaaggaggggtgagg
aaaattgttctggctactaatatggcagagactagtattaccatcaacgatgttgtcttt
gtggttgattgtggaaaagcaaaagagacatcatacgatgcattaaataacactccttgt
ttgcttccatcctggatctcaaaagctgctgcccgacagagaaaaggaagggctggtcgt
gttcaatctggcgaatgctttcatctttatcccagatgtgtttatgatgcttttgctgat
tatcaactgccagagcttttaagaacaccattacagtccttatgtctacaaataaaaagt
ctacaacttggaagcatctctgagtttttgtctagtgctctccagccaccagaggccctt
tcggttcaaaatgctgttgaatatttgaagattatcggtgccttagatgagaatgaaaat
cttacagttctagggcgcaagttgtcaatgcttcctgtagagcctaagcttggcaagatg
ctcatcttgggagctattttcaactgtttggatcccatattgactgttgttgctgggctt
agtgtgagagatccatttgttgtgccagctgacaagaaggatcttgcagagtctgccaag
gcccagtttgctgctcgtgcatacagtgatcatcttgcacttatccgggcttatgatgga
tggaaagatgctgaagcacagcaagctggttacgagtactgttggcgtaattttctttct
tctcaaacacttagggctattgactctcttcgaaagcaattctttcacttgctcaaagat
attggtctggttggcaacaattctgaaaccaacaataaatggagtaatgaggagcatatg
ctcagagcagttatctgcgcgggtttgtttccgggaatatcctctgttgtgaataaggaa
aagtcaatagcactgaaaacaatggaggatggtcctgttcttctgtacgctaactctgta
aatggaagtgtacccaaaattccatacccatggttagtgtttaatgaaaagattaaagtg
aatacagtattccttagggattcaactggtgtaactgattctatgctgctcttatttggt
gggaacatatccaaaggtggactggatggtcacctaaaaatgttgggagggtatctggaa
tttttcatgaaaccagaattagccaagacttactcaactttaaagagggaactggaggaa
ttgatacagaaaaaacttctggatcctatgttagatatacaatcgcagaatgagcttctt
tcagccgtaagattgttggtatcagaggacaactgcgatggcagatttgtgtatggtcac
caggtcctaccacagttgaagaaggcagcgaaatccaaaagtggtgatggattcgagggt
gataattctaaaaatcagcttcaaacattccttagcagagctggacatcagccaccgact
tacaaaacacagcaactgagaaacaaccaattccgttctactgtcatattcaatggcttg
gattttgttggccagccatgcagcagcaaaaaactagctgaaaaatctgctgctgctgag
gctattctatggttaaaaggagataatacccactcatatggtgatatgggtcatgcatct
gtgctgttgaagaaaagcaacaaaaaaagtaggaaaaaatcgtttagtgatgctaaatgg
ggttaa
DBGET
integrated database retrieval system
