Vicia villosa (hairy vetch): 131608705
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Entry
131608705 CDS
T09680
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131608705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131608705
03041 Spliceosome [BR:
vvo03041
]
131608705
03009 Ribosome biogenesis [BR:
vvo03009
]
131608705
03016 Transfer RNA biogenesis [BR:
vvo03016
]
131608705
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131608705
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131608705
Spliceosome [BR:
vvo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131608705
Complex C
U4/U6.U5 tri-SnRNP related factors
131608705
Ribosome biogenesis [BR:
vvo03009
]
Eukaryotic type
Pre-60S particles
Helicases
131608705
Transfer RNA biogenesis [BR:
vvo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131608705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
131608705
NCBI-ProteinID:
XP_058736201
LinkDB
All DBs
Position
LG6:complement(940029..947033)
Genome browser
AA seq
983 aa
AA seq
DB search
MGSLKRKSPEEPTTTATTTSEVQYDCLHDVSYPYGYVHASASTSSDTSQSKEPAKKFPFT
LDPFQSQAITCLENSESVMVSAHTSAGKTVVALYAIAMSLRDGQRVIYTSPIKALSNQKY
REFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWIIFDEVHYMRD
RERGVVWEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHY
IFPSGSEGLYLVVDEKGKFREDSFHKALNALVPAADGDRKKENAKWQKGLVLGKAAEETD
IFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDTEKDNIEKIFWCAMDMLSD
DDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA
KTVVFTNVRKFDGDKFRWLTSGEYIQMSGRAGRRGIDDRGVCILMIDEKMEPSTAKSMVK
GAADSLNSAFHLSYNMILNQMRCEDGDPENLLRNSFFQFQADRAIPDLEKQIKAFEEERE
SIVIEEEESLKNYYDLLEQLRSLNKDVRDIVLSPRHCLPFLQPGRLVSIQCTSSDEELSP
IFIEDQLTWGLIISFERIKGDSEDDANIRPEDASYRVDVLTRCVVRKDKLGKKSFEIVPL
KEHGEPIVVSIPISQINSISGLRLYMPKDLLPLEARENTLKKINETLSRFKEKGLPRLDP
EEDMKIQSSSYKKASRRIEAVERLFEKHEFAKSPHIKEKLKVFQRKQELTAKIKSIKRTL
RTTTTLAFKDELKARKRVLRRLGYATSDNVVDLKGKVACEISSADELTLTELMFNGVFKD
IKVEEMISLLSCFVWREKINDAAKPREELDMLYSQLQDTARRVAQLQLECKVQIDVDTFV
KSFRPDIMEVVYAWAKGSKFYEIMEITKVFEGSLIRSIRRLEEVLQQLIEAAKSIGETEL
EAKFEEAVSKIKRDIVFAASLYL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggggtctctgaagagaaaatcaccggaagaaccaaccacaacggcaacaacaacttca
gaagtgcaatacgattgtcttcacgacgtatcgtatccgtatggctacgttcacgcttca
gcttctacttcttcggatacatctcaatccaaagaacctgctaagaagttcccgttcaca
cttgatccctttcagtctcaagctattacttgtcttgaaaactcggagtctgttatggta
tctgcacatacatctgctgggaaaactgttgtggctttatatgcaattgctatgtcgctt
cgagatggtcaacgtgttatctacacttctcctatcaaggcacttagtaaccaaaagtat
agagaatttaaagaagagttttctgatgttggtttgatgactggtgatgttaccattgat
cccaatgcttcttgcttggtcatgactacagaaatctggcgaagtatgcaatacaaaggg
tctgaggtcactagggaggtggcttggatcatttttgatgaggtgcattacatgcgcgat
cgagaaagaggtgtggtttgggaagagagcattgttatgtcgccaaagaatgctcgtttt
gtcttcctgtctgctactgtccctaatgccaaggaatttgctgattgggtggcaaaggtg
caccaacagccttgtcatattgtttatacagattaccggccaactccccttcaacattat
atttttccttccggaagcgagggtttgtacttagttgtggatgaaaagggaaaattccgc
gaagacagcttccataaagctttgaatgctcttgttcctgctgctgatggtgataggaaa
aaagaaaatgccaagtggcaaaaaggtctggtgctaggcaaggcagctgaagaaaccgac
atattcaagatggtgaaaatgattatccaacgtcaatacgatcccgtgatactgttcagt
tttagcaagagggagtgtgaatttcttgcaatgcagatggcaaaaatggatcttaacggg
gatacagagaaggacaacatagaaaaaatattttggtgtgctatggatatgctttcagat
gatgataagaagctgcctcaggtttcgaacatgctgcccttgctgaaacgtggaatcgga
gtgcatcactctggattactcccaattctaaaggaagtgattgagatcttatttcaagaa
ggactaatcaagtgtttgtttgccacagagaccttcagtattggtttgaacatgcccgca
aaaactgtagttttcacaaatgtccgaaaatttgatggggacaagtttaggtggttaacc
agtggagaatatatacaaatgagtggtcgtgctggtcgacgaggtattgatgatcgggga
gtatgtatcctcatgattgatgagaaaatggagccttctaccgctaaatcgatggttaaa
ggggcagcggatagtctaaacagtgccttccatttaagctacaacatgattttgaaccaa
atgcgatgtgaagacggtgatcctgaaaatttactccgtaattctttttttcagttccaa
gctgatcgtgccattcccgatcttgagaaacaaataaaagcttttgaagaagagagagaa
tcaattgttattgaagaagaagagagtttgaaaaattattacgatctgctagagcagctt
agaagtttgaataaagacgttcgtgacattgtgttatctccaaggcactgtttacctttt
ttacagcctgggagacttgtttctatccaatgcacttcaagtgatgaagagctttctccc
atttttattgaggatcagttgacttgggggttgatcattagttttgaaaggattaagggt
gattccgaagatgatgcaaacataaggccggaagatgcatcttacagagttgatgttctt
acaagatgtgtggtgaggaaagataaacttggaaaaaaatcttttgagattgttcctctg
aaagaacacggagaacctatagtggtttccattcctatctctcagatcaattcaattagc
ggcctgcgtctatacatgccaaaggatcttttgccattggaagctcgagaaaacacactg
aaaaaaattaacgaaactctttctagattcaaggaaaagggattgccacgtctagatcct
gaagaagacatgaagattcaaagcagctcgtataagaaagcatcacggaggatcgaggct
gtggagaggctatttgaaaagcacgaatttgcaaagtcaccgcatataaaggagaagtta
aaagtttttcagagaaagcaagaactgactgcaaaaattaagtcaattaagagaacatta
agaacgactactactttagctttcaaggatgaactcaaggcaagaaagagggttcttcgg
aggctaggatatgctacaagtgacaatgtcgtggacttgaaagggaaggttgcttgtgaa
ataagtagtgcagatgaattgaccctaacagaactcatgttcaacggtgtcttcaaggac
ataaaagtagaagagatgatttctctcctgtcttgttttgtctggcgagaaaaaatcaat
gatgctgccaaacctcgggaagaacttgatatgctctattcacaattacaagacactgcc
cggagagttgcccaacttcagcttgaatgcaaggtgcaaattgacgttgacacttttgta
aagtcatttagacctgatattatggaggtggtgtatgcttgggcgaaaggttcaaagttc
tatgagatcatggagattacgaaagttttcgaaggtagtttgattagatcaattagaaga
cttgaggaagttcttcagcagttaatagaagcagctaagtcaattggagaaactgaactt
gaggcaaagtttgaggaggctgtgtccaaaatcaagagggacattgtctttgcagcatca
ttgtatttgtag
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