Vicia villosa (hairy vetch): 131609198
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Entry
131609198 CDS
T09680
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131609198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131609198
Enzymes [BR:
vvo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131609198
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131609198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Spore_YpjB
Motif
Other DBs
NCBI-GeneID:
131609198
NCBI-ProteinID:
XP_058736835
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All DBs
Position
LG6:62463894..62469240
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AA seq
653 aa
AA seq
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MTQIRPAKPSYKRFRKKKTQNPNRNHAVPMASLFQLLFLNQKRSLCTKLSTSKWKVKQVT
ASNFNESLNEIKTHISSSDFIAISMEKTGSSSTTPWHRVQPFDTAETAYLKASQSAQRFQ
LLQFAVCPFSVTDSNSIVAHPYNFLLFPRDDLKMGMPAYSFLCQTSHLASMARQGFDFNT
CIYEGISYLSRAQESIAKVRLGTGSPSLGVMKSSSPPTVADTVFIERIRSRVKHWRNTCK
NSGTNKSKHEEIIDSLRNIVLGSEQFKSRPCLNIDVCSERQVQLILQMLPDFSDHFVSLV
IPSKSGTTQAVRVVLANSREDKELLEKELQSLEDEEIKKFRGFREVIDLISASQKPVISH
NCLNDCTLIHSKFIAPLPSEVDDFVSSLCKFFPKVLDVNYLMKKSGTMKKTTNIRNALSY
LNTHFFAPVDMEVPDQDTDTVNKGKIDGLDALRLSYLFMKLCSILKISPIVAAFDNRRLA
LELEDFTFHPSSANIQESSCNEDVTVWTNNTRKINCEHLVFLWGFKFGMTAGMLKDALRE
SNDIFSEEFDVRFIDKSCTVVVFWQPGLSNDLLNIMNSEEISGGLKELVSDGLRVTGYET
YRRMCRLGLWEMNLAESLERALESSLSDEKIISERKSCEVQWCNDNVLILDDL
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgactcagatccgacccgccaaaccgagttacaaacgatttcgaaagaaaaaaacccag
aacccaaacaggaaccacgccgttccaatggcttcactcttccagctactattcctaaat
caaaagcggtcactctgcaccaaactctccacttctaaatggaaagtaaagcaggtcaca
gcttccaacttcaacgaatctttgaacgaaatcaaaactcacatttcttcttccgacttt
atcgccatatcgatggaaaaaactggctcctcgtcgacgactccgtggcaccgcgttcag
ccctttgatacggcggaaaccgcttaccttaaggctagtcagtccgcccagcggtttcag
ttgctccagttcgctgtctgcccgttttctgttacggattcgaatagcatcgttgctcac
ccgtataatttccttttgtttccaagagatgatttaaagatgggtatgcctgcttacagt
tttttgtgccagacgtctcatctggcgtccatggctcgtcaaggttttgatttcaatact
tgcatatatgaaggtatatcgtatttgtccagagcacaagagtcaattgctaaagttcgt
ttagggactgggtctccctctcttggtgtgatgaaatcttcttcaccccctactgttgct
gatacagtttttatcgagaggattagatcacgggttaaacattggagaaatacatgtaaa
aactctggcacaaacaaaagcaaacacgaagaaattatcgactctcttaggaatattgtt
ctgggtagtgaacagttcaaatcaagaccgtgcttgaatatagatgtttgcagtgaacgc
caagtgcaactaattctgcagatgctaccagacttctccgatcacttcgtttctttggtg
atcccttcaaaaagtgggaccactcaggcagttcgcgttgttttggcaaattcaagagaa
gataaggaattgttggagaaagagcttcaaagtcttgaagatgaggagatcaagaaattt
cgaggatttcgagaggtgatcgatttgatttccgcttcacagaaacctgttatctcccac
aattgccttaatgattgtacacttattcattcaaaattcatcgcaccacttccatcagaa
gtagatgattttgtgagctcgttgtgcaagtttttccccaaagtactcgacgtgaactat
ttgatgaagaaaagtggaaccatgaaaaaaacgaccaacattcgtaatgctttgtcctac
ttgaatactcatttctttgcaccagttgatatggaagttcccgaccaagatacagataca
gtaaacaaaggcaagattgatggacttgatgcattaaggctatcctatttattcatgaag
ctctgctctatattgaaaatttcccctattgtcgctgcattcgacaataggcgattggcc
ctggagcttgaagacttcactttccatccaagctcagccaacatccaagaatcatcatgt
aatgaagatgttactgtgtggaccaataacacaagaaaaatcaattgtgaacatttggtt
ttcttatggggatttaaattcggcatgacggccggcatgctgaaggatgctcttcgtgaa
tccaacgacatcttttcagaggagtttgatgtaagattcattgataagagttgtaccgtt
gttgttttctggcaacctgggttatcgaacgatcttctaaacataatgaacagtgaagaa
attagtggagggttaaaggagttagtatcagatgggttgagggtaacaggttatgagacc
tacagaagaatgtgtaggttaggtttgtgggagatgaatcttgcagagtctttagagaga
gcattggagagttctctcagtgatgaaaagattattagtgaaagaaaatcttgtgaggtt
caatggtgtaatgataatgtacttatcttagatgatctttaa
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