Vicia villosa (hairy vetch): 131609600
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Entry
131609600 CDS
T09680
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131609600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131609600
03036 Chromosome and associated proteins [BR:
vvo03036
]
131609600
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131609600
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131609600
mRNA degradation factors
5'-3' decay
Decapping complex
131609600
Chromosome and associated proteins [BR:
vvo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131609600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Aldedh
CMS1
DS
TFIIA
Motif
Other DBs
NCBI-GeneID:
131609600
NCBI-ProteinID:
XP_058737328
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All DBs
Position
LG6:complement(111354152..111359235)
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AA seq
496 aa
AA seq
DB search
MNNRARYPLGNNGLGRGGGGGGFQQRPNQQQYVQRHMMQNQHPQQQYQQNQQNQQYQQQQ
QQQQWLRRNQLSGTDTSVVEEVEKTVQSETNDSSSQDWKASLKLPPADTRYRTEDVTATK
GNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPA
LEKIDQDNNVIQVVILVPTRELALQTSQVCKELAKHLQIQVMVTTGGTSLKDDIMRLYQP
VHLLVGTPGRILDLARKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPSNRQILM
FSATFPVTVKDFKDRYLCKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQIN
QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT
RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT
EIKQIPPFIDQAIYCR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatagagcgaggtacccacttgggaacaacgggttaggacgaggtggaggtggt
ggagggtttcaacagagaccaaatcaacaacagtatgtgcagaggcacatgatgcaaaat
cagcatccacagcaacaataccagcagaatcaacagaatcaacaatatcagcaacagcag
caacaacaacagtggctgagaaggaaccagttgagtggtactgataccagtgttgtggag
gaagttgagaagactgtacagtctgaaacaaatgactctagttcacaagattggaaggca
agcctaaagcttccaccagctgatacacgctataggacagaggacgtgacagcaactaaa
ggaaatgagtttgaggattactttttgaagcgtgagctgctaatgggaatatatgagaag
gggtttgaaaggccatccccaatccaagaagaaagcattccaattgcccttactggtagt
gacattcttgctagggctaaaaacggaacaggcaaaactgctgcattttgcgttcctgca
ttggaaaaaattgatcaagataataatgttattcaagttgttatactggttccaacacga
gaattggctttgcaaacatctcaagtatgtaaagagcttgcaaagcatttgcaaattcaa
gttatggtcacaacaggcggtacaagcctgaaagatgacattatgcgtctatatcaacct
gttcatctgctagttggtactccaggaagaattttggatcttgcaaggaagggtgtctgc
gttctaaaagattgttctatgctcgtcatggatgaggctgataaacttctctccccagag
ttccagccttcgatagagcagctgattcaatttcttccctcaaaccgtcaaatccttatg
ttttcagctacatttcctgttactgtaaaggatttcaaagatagatatctttgtaagccg
tatatcattaatcttatggacgagctaactctgaagggtatcacccaattttatgcattt
gtggaggagaggcagaaagtccactgcctaaatactcttttctctaagctgcaaataaac
cagtcaatcatcttctgcaattcagtcaacagggttgaactccttgccaagaaaatcaca
gaactagggtattcatgtttctatattcatgctaagatgttgcaagaccatcgtaataga
gtttttcacgactttcgtaatggtgcctgcagaaatcttgtttgtactgatcttttcact
aggggaatagatatccaagcagtaaatgttgttatcaattttgattttcccaagaactca
gagacatatctgcacagggttggtcgatcagggaggttcggacaccttggtttagcagtg
aacttaataacctatgaggatcgtttcaatttgtataggattgaacaagaacttggcact
gaaataaaacaaattcctccattcattgatcaggccatatattgtcggtga
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