Vicia villosa (hairy vetch): 131609947
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Entry
131609947 CDS
T09680
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131609947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131609947
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
131609947
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
131609947
NCBI-ProteinID:
XP_058737766
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Position
LG6:127592992..127599798
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AA seq
617 aa
AA seq
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MDFNHHLSDLSTSTQALPSDDDFRFHYNSSEFRHLIEEIARKSQSMLNQIGSSENIWGLG
SSFPADIDDAYEWIVNANDDALELVDEIVDEFHRVLKEQDMEEGEDGFFKMKKGTKWLGF
LGGEANGKKPKVSFHVHTLRKPQYHYNLAVDNSNQPFEHVWLEKSEDGQRFIHPLEKLSV
FDFVDEDDIESLVPVMPPPLECTPFKLVEDVKGLMELADKLSSVNEFAVDLEHNQYRSFQ
GLTCLMQISSRTEDFIVDTLKLRDHVGTHLREFFMDPTKKKVLHGADRDIVWLQRDFGIY
VCNMFDTGQASRVLKLERYSLQHLLQLYCGVTANKEYQNADWRARPLPDVMIKYGREDTH
YLLYIYDVMRIKLFELSKESESSDPLLEVYERSYNVCMKLYEKEPLTEDSYLNLKGLRGA
GFNGQQLAVVSGLFEWRDVLARSEDESTGFILPNKVILEIAKQMPVTTSNLRRLVAERSR
LPYVERNHDIIINIVRHSMQKAAAFEEAALRLKEEHAAFEEAALRLKEENAASENGANVQ
LQIMPTGAYGATPPGHPVSEGNGFPDKKGKKKIKVEQIVASETSDPKKPLSATVSTSTLD
ANIILDLDSDSDDILQE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggacttcaaccaccacctctcagacctttccacttccacacaagcccttccctccgac
gacgacttccgcttccactacaactcctccgaattccgacacctcattgaagaaatcgcc
agaaaatcccaatcaatgctaaaccaaatcggttcctccgagaatatctggggtctaggc
tcctctttccccgccgacatcgatgatgcttacgaatggattgttaatgcaaacgacgac
gctttggagcttgttgacgagattgtggatgagtttcatagggttctgaaggagcaggat
atggaggaaggggaagacgggtttttcaagatgaagaaggggacgaaatggcttggtttt
ttgggtggtgaagcaaatggaaagaaaccgaaagtgtcgtttcatgtacacactcttagg
aagcctcagtatcattataaccttgcggttgataactctaatcaaccttttgaacatgtt
tggttggaaaagagtgaagatggtcaaaggtttatacatccgctggaaaaactctctgtt
tttgattttgttgatgaagatgatattgagagtcttgtaccagtaatgcctcctccactg
gaatgcacacctttcaagcttgtggaggatgtcaaaggattaatggagttggctgataag
ctgagctctgttaatgaatttgcggtggatttggaacataatcaatatcggtcttttcaa
ggtttgacttgtttgatgcaaatatcaagccgaactgaagattttattgtggatactctg
aagctccgggatcacgttggaactcatctgagggagtttttcatggaccctaccaagaaa
aaggtattgcatggagcagatagagacattgtgtggctgcaacgggattttggcatttat
gtctgtaatatgtttgacactggccaggcttctagagtgttaaaattggagagatatagt
ttgcaacatcttttgcaactctattgtggggtaactgcaaacaaagagtaccagaatgca
gactggagagcacgcccccttcctgatgtgatgataaagtatggaagagaagatacacac
taccttctttatatatatgatgtaatgaggatcaagctatttgaactgtctaaggagtcg
gaaagttccgatcctctgttggaggtttacgagaggagttataatgtctgcatgaagctg
tacgagaaagagcctttaacagaagactcctaccttaatctaaaagggttgcgaggggct
ggttttaatggtcagcagcttgctgttgtttcagggctttttgaatggcgtgatgttctt
gctcggtcagaagatgaaagtactgggtttatattgccaaataaagttattcttgaaatt
gctaagcagatgcctgtcactacaagtaatctacggcgattagtagcggagaggtcaagg
ctcccatatgttgagcgcaatcatgatatcattattaacattgtcagacattctatgcaa
aaggctgctgcctttgaagaagctgcacttcgtttgaaagaagaacacgctgcctttgaa
gaagctgcgcttcgtttaaaagaagaaaatgcagctagtgaaaatggtgcaaatgttcag
ttgcaaataatgccaacgggtgcttatggtgcaactccgccgggccatccagtttcagaa
gggaatggttttcctgacaaaaagggcaagaaaaagatcaaggtagaacagattgtagca
tcagagacatcagatccgaagaaacctctttcagctacagtttccacatctaccctggat
gcaaatataatattagacttggattcagactcggacgatatattgcaagaataa
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