Vicia villosa (hairy vetch): 131610442
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Entry
131610442 CDS
T09680
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131610442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvo03041
]
131610442
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131610442
Spliceosome [BR:
vvo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131610442
Complex B
131610442
Complex C
U2 SnRNP specific factors
131610442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
131610442
NCBI-ProteinID:
XP_058738379
LinkDB
All DBs
Position
LG6:149033580..149038208
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AA seq
773 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRKTHDNYEDNDLDNIDYDDDATEE
PSNNNGGGGGGEEEEEVDPLDAFMEGIHEEMKAAPAPKPKEKVEDRFKDDEEDPMESFLR
AKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPVVVDKKKIEPIAPLDH
TEIDYEPFTKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPVKTFEDCGFASQIM
SAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE
GPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPG
RLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPFKV
EKLAREILSDPTRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPEMIDQGDTLVFA
SKKATVDEIEAQLGQRGFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIK
SIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNV
STELTELAMKDGRFRSKRDARKGGGRKGKGRGGGAGGKGVRGVDFGLGIGYSSESNNAPS
NSVPNRSAAVNSLRTGMMSQFKSSFVAASSNSQNQGLGNNPNMAVNKRPALAGFVSGGSI
GGDINTHQQTSSYNPATSAVNSTSQSPAVNPGQNSTNSSSKPRERRRPSGWDR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagttcggattcgaaggtttcggcataaaccgccaatccacctacagt
ttcgaacgatcccaacctcctcaacgactctacgtccctccttcatctcgtaaaacccac
gacaactacgaggataacgacctcgacaacatcgactacgacgacgatgccacagaagaa
cccagcaacaataatggcggcggtggtggcggtgaggaggaggaggaagttgatccgttg
gacgcttttatggaagggatacatgaagagatgaaggcggcgccggcaccgaagccgaag
gagaaggtggaagatagatttaaagacgatgaggaggatcctatggagagtttcttgagg
gcgaagaaggatttagggttgacgttggcgtctgatgcgctgcatgctgggtatgattct
gatgaggaggtttatgcggctgctaaggctgtggatgctggtttgattgattatgattcg
gatgataatcctgttgttgttgataagaagaaaattgaacctatagctcctctggatcat
acggagattgattatgagccgtttactaaggatttttatgaggagaccccttcaatatca
ggtatgagtgagcaagatgtaagtgaatacaggaaaagtttggctattcgggtatcgggt
tttgatgttcctaagccggttaaaacatttgaggactgtgggtttgcttcacaaattatg
tctgctataaagaaacaaggttatgagaagcccacgtctatacaatgccaggcattacca
gttgtgctttctggtagagatattattggcatagcgaaaactggttctggtaaaactgct
gcttttgtgcttcctatgattgtgcatatcatggatcagcctgaacttcagaaggaggaa
ggtcctataggggtgatatgtgcacctactagagaattagcacatcagatatatctagag
gccaagaaatttgccaaagcatatggtatacgcgtttctgctgtctatggtggaatgtca
aaacttgaacaattcaaagaactcaaggcaggctgtgagattgttgttgctactcctggg
agattgatagacatgttaaaaatgaaggcattgacaatgctgagagcgacttacctggtt
cttgatgaggctgatcgaatgtttgatttgggatttgagccacaagtaaggtccattgtt
ggtcagattaggcccgaccgccaaactttgctcttttctgcaacaatgcctttcaaagtt
gaaaagttagccagggaaatcctttccgaccctaccagagtgacagtgggggaggtgggg
atggcaaatgaagatattactcaagttgttcaagtaattccttccgattctgaaaaatta
ccgtggcttttggagaagctgcctgaaatgatcgatcaaggtgatacattagtttttgct
tccaagaaggccactgtggatgaaattgaagcacagttgggtcagagaggctttaaagtt
gctgccctgcatggtgataaggatcaagcttctcggatggatattttacaaaagtttaaa
tctggcacttaccacgtgcttattgcaactgatgttgctgctcgtggtctcgatatcaag
tcaattaaaacagtggtcaactttgatattgctaaagatatggacatgcatgtccatcgc
attggaagaacgggccgtgctggtgacaaggacggagttgcatacactcttataactcaa
aaagaagcacggtttgctggtgaattggttaatagtttagttgctgctggtcaaaatgta
tccacagagctgacagaacttgccatgaaggatgggagattcaggtcaaaacgtgatgcg
aggaaaggaggtgggagaaaaggcaaaggcaggggtggcggtgcaggtggcaaaggcgtg
cgtggggtggactttgggctgggcattggatatagttcagagtcaaacaatgcaccatct
aactcagttccaaatcggtccgccgctgtaaattctctgcgaacaggaatgatgtcccaa
tttaagagtagcttcgttgctgcatcatcaaactcccaaaatcaaggactcggtaataat
ccaaacatggctgttaataagagaccagcactcgccggctttgtatctggtggatcaatt
gggggcgatataaatacccatcagcaaacttcttcatacaatcctgctacatccgccgta
aattcaaccagtcaaagtcctgcagtaaatcctggtcagaacagcacaaacagtagctcc
aaacctagagaaaggcggaggccatctgggtgggatagatag
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