Vicia villosa (hairy vetch): 131614980
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Entry
131614980 CDS
T09680
Name
(RefSeq) sm-like protein LSM4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131614980
09123 Folding, sorting and degradation
03018 RNA degradation
131614980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131614980
03041 Spliceosome [BR:
vvo03041
]
131614980
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131614980
mRNA degradation factors
5'-3' decay
Lsm complex
131614980
Spliceosome [BR:
vvo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
131614980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
131614980
NCBI-ProteinID:
XP_058742487
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Position
LG1:115606892..115609154
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGAPGRQVKGVGRGFEE
GGARGAGGGRGRGGPGGRPGGNRGAGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgctcccactttcccttctcaagaccgctcaaggccaccccatgttggttgaactcaaa
aatggggagacttataacggccatttggttaattgtgatacatggatgaacatccatctc
cgagaagtcatttgtacctctaaagatggagatagattttggcgtatgcctgaatgctat
attcgggggaataccattaagtaccttcgagttcctgatgaggttattgacaaagtccag
gaagaaactaagagtcgcactgatcgaaagccacctggtgtgggacgtggaaggggaaga
ggtagggaggatggtgctcctggacgtcaagtaaaaggagttggacgaggctttgaagaa
ggtggtgctaggggggctggaggaggccgaggaaggggtggcccaggtggaaggcctggt
ggaaacagaggtgcagggcgaggtagaggttga
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