Vicia villosa (hairy vetch): 131615883
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Entry
131615883 CDS
T09680
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131615883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131615883
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131615883
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131615883
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
OB_NTP_bind
HA2_N
Ank_5
AAA_19
Ank_2
ResIII
nSTAND3
AAA_22
ATPase
Mei5_like
AAA_23
AAA_11
Rad17
AAA_7
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
131615883
NCBI-ProteinID:
XP_058743044
LinkDB
All DBs
Position
LG7:complement(92994831..93003585)
Genome browser
AA seq
1186 aa
AA seq
DB search
MTKGKKKGNRNPSYGRKPKVDESTRIRLTKVLEEFIASNAKAYRFEAGLSNEVRHYVHLT
AREMGFKSKSYGKGKERIVSIRKIKKKGGTGTGRKNQLESLPLFTFSEESKLALGELFAH
FPPGDGNLKDIVGENSGRINNRRHNTSDIFSRPSMTKKEITRKLDTLNSKRESASDLKEI
TELRSKLPIASYKDTITSTVDSHQVVLISGETGCGKTTQVPQYILDHMWGKGEACKILCT
QPRRISAISVSERISRERGEAAGENVGYKIRLESKGGKQSSIVLCTTGLLLRVLVSKGSR
RSKMKHVKDEISDITHIIMDEIHERDQYSDFMLAILREILPSYPHLRLILMSATIDTARF
SQYFGGCPIIQVPGFTYPVKTYYLEDVLSAVKSSKARLSIPTNNHKLSEEQKDSFDEAIN
LAWSNDEWDPLLEMVSSEGTPELFNYQHSLTGLTPLMVFAGRGRVGEMCMLLSFGADCKL
KAKDGTSALEIAERENQPEAAEIIKKHLDGSNSIDEQNLLNKYLEKVKPEHVDAGLIEQL
IRKICSDSKDGGILVFLPGWDDINKARDKLLASSFFKNPSEFMVLPLHSKVPSLEQKVVF
KRPPPGCRKIVLSTNIAETAVTIDDIVYVIDSGRMKEKSYDPYNNVSTLQSSWISKASAK
QREGRAGRCQPGVCYHLYSKLRAAALPDFQTPELQRMPIEELCLQVKMLDSSSKIEVFLA
KTLDPPVSEAIRNAIVVLRDIGALSNDETLTDLGEKLGSLPVHPVISRMLFFAILMNCLD
PALTLAVASDYRDPFTLPMLPEDKKRAADAKAELASLYGGCGDQLAVLAAFECWNNSKKM
GLEARFCSQYYVSAGTMKMLSRMRTQLQKELIRIGFIPSDVSSYSMNAYDPGVLHAVLVS
GMYPMVGRLCFPNKGAQRAIIETASGDKIRLHSRSTNFKLSGKRNLGQALVVFDEITRND
MGINIRNCSLVGQLPLLLLSTEIAVAPVEEDDHAKEEDEEEGEDDDDHEGSGDDGMELDT
ESSEKNKDKFMSSPDNNVKIIVDRWLYFGSTAIDVSLLYCLRERLSAGILYKVTHPRNPL
PPILGASMHTIACILSCDGCSGMTAAADGIDKLTSMVNATNLGKPPTLAQPTRAQRLHNR
NRLKESSAKFVNHGGFQNSGPSKASTSSSNIGNPSGISSQPLPHNT
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagggaaagaagaaagggaacagaaatccgagttacggtcggaaacccaaggtc
gatgaaagcacaaggattcgtttaactaaagttttggaggagttcatagcttccaatgcc
aaagcttacaggtttgaagctggtttgtccaacgaagtccgtcattatgtgcatctaaca
gcccgagaaatggggtttaaatctaaaagttatgggaaagggaaggaaaggatagtgtca
attcgaaaaatcaagaagaagggtgggactgggactgggcgtaaaaatcagttagagagt
cttcctcttttcacattttcggaagagtcaaaactggcattaggcgaattatttgcacat
tttccacctggtgatggaaacttgaaggatatagttggagaaaatagtggcaggattaat
aacagaagacataatacatctgatatttttagcaggccctctatgaccaaaaaggaaatt
actcggaaattggacaccctaaattctaaaagggagagtgcatccgatttgaaagagatc
actgagttgagatctaagctaccaattgcatcttacaaggatacaattacatcaacagtt
gattctcaccaggtagttctcatatctggcgagactgggtgtggaaagactacacaggtc
ccacaatatatattggatcatatgtggggtaaaggtgaggcatgtaagatactttgcact
cagcctcgacgtatctctgcaatttcagtttctgagagaatctccagagagagaggagag
gctgctggagaaaatgttggatacaagatacgtttagaaagcaaaggtggaaagcaatca
tctattgtgctatgtactactggacttctattaagggtgttggtttctaaaggttctcgt
cggtcaaagatgaagcatgtgaaggatgaaatttctgacattactcacatcattatggac
gaaattcatgaaagggaccaatattcagacttcatgttggcaatactcagagaaatcctc
ccttcatatcctcatctacgtttgatattaatgagtgcaacaattgatactgcgagattt
tctcaatattttgggggctgcccaattatccaagttccagggttcacttatccggtaaaa
acttattatctggaagatgtactttctgctgtaaaatcaagcaaggccagacttagtatt
ccaacaaacaatcacaagctaagtgaagaacaaaaggattcttttgacgaagctattaat
ttggcttggtctaatgatgagtgggacccactgttagagatggtttcttctgaaggaacc
cccgaactctttaattaccagcattctttaaccggccttacaccgttaatggtgtttgct
ggaagaggtagagttggtgaaatgtgcatgctcttatcttttggggcagattgcaagtta
aaggccaaagatggaacaagtgcactagagattgcagaaagagagaaccaaccagaagca
gctgaaataataaaaaagcacctggatggttccaactccatcgatgagcagaatttactt
aataaatatcttgagaaagtcaaacctgaacatgttgatgctggtctaatagagcagctg
ataagaaaaatatgttccgattcaaaagatggaggcatccttgtttttcttccaggatgg
gatgacataaacaaagctcgtgataaattgcttgcatcctcttttttcaagaatccttcg
gaatttatggtcttacctctgcattctaaggttccatccctggagcaaaaggtggttttt
aagcgcccacctcctggctgccgcaaaattgttctgtcaactaatattgctgaaacagcc
gtcaccattgatgatatagtgtatgtcatagactctggacgaatgaaggaaaagagttac
gatccttataataatgtctcaactcttcaatcatcttggatttcaaaagcaagtgctaag
caacgagaggggcgtgctggccgttgtcaacctggagtttgttatcatttgtattcgaag
ttgcgagcagctgcgttgccagactttcagactccagaacttcagagaatgcctattgag
gagctatgtctgcaggtaaagatgcttgattcaagcagcaaaatagaagtgtttcttgcc
aagacattagatccaccagtttctgaggccatacgtaatgctattgtagtccttcgcgat
attggggcattgtcaaatgatgaaacactcactgatcttggagagaagcttggttctctc
cctgttcacccagtaatcagcaggatgctgttttttgctatattaatgaactgccttgac
ccagctttgactctagcggttgcatctgattacagagatccatttacacttccaatgtta
cctgaagacaagaagagagccgcagatgccaaagccgagcttgcttctttatatggggga
tgtggtgatcagcttgctgtactagctgcatttgaatgctggaacaattcaaaaaaaatg
ggtctggaagcacggttttgttcgcagtattatgtgtctgcaggtaccatgaagatgtta
tctcgcatgcgtacgcagctccaaaaagaacttatccggattggatttattccttcagat
gtttcaagttacagcatgaatgcatatgaccctggtgtgctgcatgcagttttggtgtcg
ggtatgtatccaatggttgggagattatgttttccaaataaaggtgcacaaagggctatc
atcgaaactgccagtggtgataaaattcgcttgcacagccgttccacaaattttaagctg
tcgggcaagagaaatttaggtcaggctttagttgtgtttgacgagattactcgcaatgat
atgggtataaacataaggaattgcagtctcgtgggacaacttccacttttgctgctttca
actgagattgctgttgctccagtagaagaggatgatcatgcgaaggaggaagatgaggag
gaaggagaggatgacgacgaccatgaagggagtggagatgatgggatggagttggatact
gaatccagtgaaaaaaacaaggataagttcatgtcttcccctgataacaatgttaaaata
attgtggaccgttggctttattttggttcaactgcaattgatgtttctctgttatactgc
ttgagagagcgattatcagcgggaattttatacaaagtgacacatccgaggaatcctctt
ccccccatcctaggggcctctatgcatactatagcttgcattctatcttgtgatgggtgt
tctggcatgacagcggcagccgatggtattgacaaactgaccagtatggtaaatgcaacg
aatctagggaagccaccaacattggcacagccaacacgggcacagcggttgcataatcgt
aatagactaaaagaatcctctgcaaaatttgttaatcatggtggattccagaatagtgga
ccttctaaagccagcacatcttcgagcaatattggaaatccaagtgggatcagttcccaa
cctctcccccataacacttga
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integrated database retrieval system
