Vicia villosa (hairy vetch): 131615909
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Entry
131615909 CDS
T09680
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131615909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131615909
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131615909
mRNA cycle factors
Common to processing body (P body) and stress granule
131615909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
DUF5611
Motif
Other DBs
NCBI-GeneID:
131615909
NCBI-ProteinID:
XP_058743076
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All DBs
Position
LG7:complement(93786803..93793369)
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AA seq
976 aa
AA seq
DB search
MIVETDKMSAPSPWERAQRLFDKNLELEKKRRRSAQAHVPSDPNIWPQLRENFEAIILED
HAFSEKHNIEYSLWVLHYKRIEELRAHFNAAITSASSKSPQGGKGSVRPERITKIRQQLK
TFLSEATGFYHDLIMKIKAKNGLPLGYFEDSENLIVMEKDGKKSAEMKKSLISCHRCLIY
LGDLARYKGLYGEGDSKKREFAAASSYYLQAASILPSSGNPHHQLALLASYSGDELAVIY
RYFRSLAVDSPFTTARDNLIVAFEKNRQSYSQLSGDVKAVAVKESSGQLDGKGRGKIDAK
LVTRGNGVEAYPRKEGASNIQETYKSFCTRFVRLNGILFTRTSLETFTEVLSLISTGLRE
LLSSGQDEELNFGQDALENGLAIVRIISIIIFTVHNAKKESEGQTYAEIVQRAVLLQNAF
TAAFELMSIVIERCVQLQDPSCSFLLPGILVFVEWLACYPDLAAGNDMDENQSTVRSKFW
NHCISFLNKLLSVGPMSIGDEEETCFNNMSRYEEGETDNRLALWEDFELRGFVPLIPAQT
ILDFSRKHSFGSDREKERKARVKRIFAAGKALANIVRTDQQRIYFDSKGNKFIIGVEPSI
SDDFALAPGKPIVEDLVKENEADKPKLGIVQSDHHQYLEGEDDDDDDDEVIVFKPIVAEK
RADVLVASSGVTHKGLEPVPVASGVDVKFNVNSAFNPPDELGLQTFLPASVSSMMPQGLQ
PVQQHSSRWLEGGVSLANSFDGLGFSENGHVIKPELPLHEAVSVFNRASLSVPFQQHLST
GTNSFYGLSKAEDLIIPSKVDTIASAGVIADNSFVKSLPVSQADLKKSPVSRPSRHRGPP
PGFTHVSPRLDMEPAVSDSINVNPVMDDYSWLDGYQLPASAKGSAPNGPITYSQSNSHQV
NDNISSGAVCFPFPGKQVPSALQGVTQNGWQEYHTSEPLNAHHHQPQQPITNGNQHFTPL
PEQFQGQSIWTGRYFV
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgatagtagaaactgataaaatgtctgctccttcaccgtgggagcgtgctcagcgcctt
tttgataagaatcttgaattggagaaaaaacgccgtagatcagctcaggcacatgttccg
tcagatcccaatatttggccacagcttcgtgagaactttgaagcaataattcttgaggat
catgctttttctgagaagcacaatattgagtattctctctgggtattgcattataagaga
attgaagagttaagggcacatttcaatgctgctattacttctgcaagctcaaaatcacct
cagggtgggaaaggttctgtacgacctgagcggataactaaaataaggcagcagttgaag
acattcctttcagaagcaactgggttttaccatgatcttatcatgaaaatcaaagccaag
aatgggcttcctctgggttactttgaggactctgagaatttgattgtgatggagaaagat
ggaaagaaatctgctgagatgaagaaaagtttgatatcttgtcatcgttgtttgatatac
ttgggtgatcttgctcgctacaaaggattgtacggtgaaggtgactcaaaaaagcgagag
tttgcagcagcttctagttactatttacaagctgcgtctatcttgccttcaagtggaaat
ccccaccatcagcttgctttgttggcttcatattctggtgatgagctcgcagttatttat
cgttattttcggagtctggctgtggatagtccatttacaactgctagagataatttaata
gttgcatttgagaagaatcgacaaagttactctcagctctctggtgatgttaaagctgtt
gcagtcaaggaatcttctggacagctagatggcaaaggaagagggaagatagatgcaaaa
cttgtgactaggggtaatggtgtggaagcatatcctagaaaggaaggagcatccaacata
caggagacttacaaatccttctgcactcgctttgtccgtctaaatggaatcctgttcact
cgtacaagtcttgagaccttcactgaagttctctctcttattagcactggtctgcgcgag
cttctgtcttccggtcaagatgaagaactgaattttggccaggatgctcttgagaatggc
cttgccattgtcagaattatttccattatcatctttacagttcataatgcgaagaaggaa
tctgaaggtcaaacttatgcagaaattgtacagcgggctgttctacttcagaatgcattc
actgcagctttcgaactgatgagtattgttatagagagatgtgtgcagctgcaggatcct
tcttgtagttttcttctaccaggcattttggtttttgttgagtggttggcatgttatccc
gatcttgctgcaggcaatgatatggatgagaatcaatcaactgttagatcaaaattttgg
aatcattgtatttccttcttgaacaagcttctttcagttgggcctatgtctattggagat
gaagaggagacttgctttaataacatgagtaggtatgaagaaggggaaactgataaccgt
cttgctttgtgggaggactttgagcttagagggtttgttccacttatccctgctcaaaca
atcttggatttttcaaggaagcattcgtttggaagtgatagagaaaaagaaagaaaagcc
cgggtcaaaaggatttttgctgcaggaaaggctttagcaaacattgttcggactgatcag
caaaggatatattttgattcaaagggaaataaatttattattggtgttgagcctagtatc
tcagatgattttgctcttgctcctggcaagcctattgtagaagacttggtgaaagaaaat
gaagcagacaagccaaagttggggattgttcagtcagaccaccaccagtatctggaagga
gaggatgacgatgacgacgatgatgaggttattgtttttaaacctattgtagcagagaag
cgagctgatgttttggttgcctcatcaggggttactcacaaaggtttagagccggtccca
gtagcttcaggagtggatgttaaatttaacgttaattctgctttcaaccctcctgatgaa
ctgggccttcaaacttttttacctgcttctgttagttctatgatgcctcaaggcttgcaa
ccagttcagcagcattcttcaaggtggctagaggggggagtttctctggccaacagtttt
gatggtcttgggttctcagagaatgggcatgttataaaacctgagctcccactgcatgaa
gctgtatcagtcttcaaccgcgcttcactttctgttcctttccagcaacatttgagtact
gggactaattcgttttatggtctctcaaaagctgaagacttgataataccatccaaagtt
gatactattgcatctgctggagtaattgcggataactcttttgtgaagtcattaccagtt
tcacaagctgatttgaaaaaatctccagttagccgtccttctaggcaccgtggacctcct
cctggtttcactcatgtttctcctaggcttgatatggaacccgctgtttcagattcaatt
aatgtgaatcctgttatggatgactacagttggttggatggatatcagttgcctgcatca
gccaaaggttcagcccccaatggtcctattacttatagtcaatcaaattcccatcaagta
aatgacaatatttcgagtggggcagtttgctttccttttcctggaaaacaagttccatct
gcactgcagggggtcacacagaatggttggcaagagtatcatacttccgagcctttaaat
gcacaccatcatcagccacagcaaccaatcacaaacggaaatcaacactttactccactg
cctgagcaatttcaaggacagtcaatctggacaggtcgttacttcgtgtga
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