KEGG   Vicia villosa (hairy vetch): 131616024
Entry
131616024         CDS       T09680                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
vvo  Vicia villosa (hairy vetch)
Pathway
vvo04120  Ubiquitin mediated proteolysis
vvo04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:vvo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    131616024
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    131616024
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vvo04121]
    131616024
Enzymes [BR:vvo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     131616024
Ubiquitin system [BR:vvo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    131616024
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     131616024
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_DCAF4 zf-C3HC4_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd zf-C3HC4 WD40_like WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 zf-C3HC4_3 zf-RING_2 zf-RING_UBOX Beta-prop_WDR35_TULP_N zf-C3HC4_4 Beta-prop_WDR75_1st Beta-prop_DCAF12 Beta-prop_SCAP U-box zf-RING_5 Beta-prop_IFT122_2nd Beta-prop_SPT8 YbfN zf-Nse DUF1664
Other DBs
NCBI-GeneID: 131616024
NCBI-ProteinID: XP_058743224
LinkDB
Position
LG7:complement(96502448..96509975)
AA seq 670 aa
MEEHSVGPLVPAVVKPEPTKNLSTDTTAAGDAVPTMSELDKDFLCPICMQIIKDAFLTAC
GHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLLDKLLKKTSDRQISKTASPVEHFR
QAVQKGCEVTMKELDTLLLLLTEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEVQT
DLQFIKEDIGAVEKHRMDLYRARDRYSVKLRMLDDSAGRKSRHSSMDLNSSGLASSPLNL
RGGLSSGSHTKKNDGKSQISSHGHGIQRRDPISGSDSQYINQSGLALVRKKRVHTQFNDL
QECYLQKRRQAADKPNGQQERDTNFISREGYSCGLDDFQSVLTTFTRYSRLRVIAEIRHG
DIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCPVVEMTTRSKLSC
LSWNKYAKNQIASSDYEGIVTVWDVTTRKSLMEYEEHEKRAWSVDFSRTDPSMLVSGSDD
CKVKVWCTNQEASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVF
TGHKKAVSYVKFLSNDELASASTDSTLRLWDVKQNVPVRTFRGHANEKNFVGLTVSSEYI
ACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAEDEAGSYFISAVCWKSDRPTILTANSQ
GTIKVLVLAA
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggaagaacactcagtaggacctctagtccctgcagtagtgaaaccagaacctactaaa
aatctctccaccgacaccaccgccgccggcgacgctgttcccaccatgtctgagttagat
aaggacttcctatgtccgatttgcatgcagatcatcaaagacgcgtttctcaccgcctgt
ggccatagcttctgctacatgtgtattattactcatctccggaacaaaagcgattgtcct
tgctgtggtcattacctcaccaacagtaatttgttcccgaacttcttacttgataagcta
ctaaaaaagacatcggatcgtcaaatatcaaagactgcttctcccgtggagcatttccgt
caggcagtacaaaagggctgtgaagtgacaatgaaggagctcgacacccttttgttactc
cttactgagaagaaaagaaaaatggaacaagaagaagctgagagaaatatgcaaatattg
ttagatttcttgcattgcttacgcaagcaaaaagttgatgagttgaaggaggtgcaaact
gatctccagttcataaaggaggacattggtgctgtggagaaacatagaatggacttgtat
cgtgctcgggacaggtactctgtgaaactgcggatgcttgatgattctgctggaagaaaa
tcacggcattcatcaatggacttgaatagcagtggcctcgcatctagtcctttaaatctt
cgaggagggttgtcttctgggagccatactaagaaaaatgatggaaagtcacaaatcagc
tctcatgggcatggaatccagagaagagatcccatcagtggatcagattcacagtatata
aatcaatcgggtcttgctctagttagaaagaagagggtgcatacacagttcaatgaccta
caagaatgttatctacaaaaacgacgacaagcagcagataaaccaaatggccaacaggaa
agggatacaaatttcataagtcgagaaggttatagttgtggtcttgatgattttcagtca
gtcttgacaactttcacacgctacagtcgattgagagtcattgcagaaataagacacggg
gatatatttcattcggccaacattgtttcaagcatagagtttgaccgtgatgatgatttg
tttgctactgctggagtttcccgacgtatcaaagtttttgatttttctgcggtagtgaat
gaacccacagatgctcattgtcctgttgtggaaatgactacgcgctcaaaacttagttgc
ttgagttggaataaatatgccaagaaccaaatagctagtagtgattatgaaggaattgta
actgtttgggatgtgaccactcgaaagagtttaatggaatatgaagagcatgaaaagcgt
gcatggagtgttgatttttcaagaacggatccctctatgcttgtatctggtagtgatgat
tgtaaggtcaaagtttggtgcacaaatcaggaggccagtgttctaaatatagacatgaaa
gcaaacatatgctgcgtgaagtataatcctggatctgggaattacatcgcagttgggtca
gcagaccatcacatccattattatgatctgagaaatattagccggccagtccatgttttc
actgggcacaagaaggctgtttcatacgtgaaatttttgtcaaacgacgaacttgcatcg
gcatcaacagatagtacactgcggttatgggatgtgaagcaaaacgtaccagttcgtaca
ttcagaggtcatgcaaatgagaaaaactttgttggccttacagtaagcagtgaatacatt
gcatgtggcagtgaaacaaacgaagtatttgtctaccacaaggaaatttccaagcctctc
acatggcatagatttggtaccctagatatggaagatgcggaggatgaggctggatcgtac
ttcatcagtgcggtatgctggaagagtgatcgccccaccatactaactgcaaatagtcaa
ggcaccattaaagtgctggtgctcgctgcttaa

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