Vicia villosa (hairy vetch): 131616648
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Entry
131616648 CDS
T09680
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131616648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131616648
03036 Chromosome and associated proteins [BR:
vvo03036
]
131616648
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131616648
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131616648
mRNA degradation factors
5'-3' decay
Decapping complex
131616648
Chromosome and associated proteins [BR:
vvo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131616648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
131616648
NCBI-ProteinID:
XP_058744012
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All DBs
Position
LG7:114827814..114837339
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AA seq
525 aa
AA seq
DB search
MNNNNRARYPPPGIGPGRGGANPNVNLNQNPNQNPNLNNQFQQRPPYHHHNQPQQHQPHH
QQQQHQQQQYYAQRQMVQQQHHQQQNQQQQQQQWLRRAQLGGSESNAADEVEKTVQSEAI
DSSSQDWKAGLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEE
SIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK
ELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKHCSMLVMD
EADKLLSPEFQPSIQQLIHFLPTNRQILMFSATYPVTVKDFKDRFLNKPYVINLMDELTL
KGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHA
KMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSG
RFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatagggcgagatatccacctcctgggatcggtccgggtcgcggagga
gcgaatcctaacgtgaatctgaaccagaacccgaaccagaatcccaacctgaacaatcag
tttcagcagagaccaccttaccaccaccataaccaaccgcaacagcaccagccacaccat
cagcagcaacagcaccagcagcagcagtactatgcgcagagacaaatggtgcagcagcaa
catcatcagcagcaaaatcagcagcagcagcaacaacagtggctgagaagggcgcagttg
ggtggttcggaatccaacgctgctgacgaggttgagaagaccgtgcagtctgaagccatt
gactcaagttctcaagactggaaggccggacttaagattccaccagctgatacacgctat
aggacagaggatgttacagcaactaaaggaaatgaatttgaggattactttttgaaacgt
gagctgctcatgggaatatatgagaagggttttgaaagaccttcccccatccaagaagaa
agcattccaattgctcttaccggaagtgacattcttgccagggccaaaaatggaactggc
aaaacagctgcgttttgcattcctgcattggaaaaaattgatcaggataataatgttatt
caagttgttatcttggtcccgacacgtgagttggctttgcaaacatctcaagtgtgtaaa
gagcttggaaagcatttgaaaatccaagttatggttacaacaggaggtaccagtctaaaa
gatgacataatgcgcttatatcaaccagttcacctgcttgtcggtaccccaggaaggata
ttggatcttacgaaaaagggtgtttgcgttcttaagcattgctcaatgctggtaatggat
gaggctgacaagcttctctccccagagttccagccttcgattcagcagctgattcatttt
cttccaacaaaccgtcaaatcctgatgttttcagcaacatatcctgttactgtgaaggac
ttcaaagataggtttcttaacaaaccatatgtcattaaccttatggatgagcttactctg
aagggtattacacaattttatgcatttgtggaagagagacagaaagtccactgcttaaat
actctcttttctaagctacaaataaaccaatcaattatcttctgcaactcagtgaaccgg
gttgaactccttgccaagaaaatcactgaactggggtattcatgtttctatattcatgca
aagatgctgcaagaccatcgtaatagagtatttcatgatttccgtaatggtgcatgccgg
aatcttgtctgtactgatcttttcactaggggaatagacatccaagcagttaatgttgtt
attaactttgattttcccaagaactcggagacttatttgcacagggttggtcgttcaggg
agatttggtcaccttggtttagcggtgaacttgatcacttatgaggatcgctttaattta
tataggattgaacaagaacttggcactgaaataaagcaaattccgccacacattgatcaa
gcattttattgccggtga
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