Vicia villosa (hairy vetch): 131623188
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Entry
131623188 CDS
T09680
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131623188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvo03021
]
131623188
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131623188
Transcription machinery [BR:
vvo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131623188
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131623188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
131623188
NCBI-ProteinID:
XP_058750176
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
MENLRRPIDRSKEPILKRPRLIKDPRNAESSAPMFPQRQQQVTSASRFRQNDRDVENNDD
GYQPQPLPFQELVAQYKSGLAELTFNSKLIINNLTRIADENRAAEKAIAATICANILEVP
SEQKLPSLYLLDSIVKNIGRDYIKFFAAKLPEVFCKAYKQVEPPVRQSMKHLFGTWKGVF
PPQTLQAIDKELGFTPAVNGSSSASAALRSDSQTHHPSHSIHVNPKYFERQRVQESSRSN
QHTHRDPFNDPVPEKSISASYGGGEHGSNLSRNMGMGIGRTDGSITELGHRNLYNKAAGV
SGTISGQRNGVGLKHSFSNTEATTISDAQHQPTRNITGIKRNAMSNSWKNSEEEEYMWDD
MNIGLTSHGVRNNLGNDAWTADDENLDAEENHHQIRNVFGTNVDREMTNRSQATQKKQFR
HHPSLSWKLQEHQSIDELDQELGPSDGCMSISGSLLGNANSSAARMGNRAFLPNARIGGQ
QFHSVGSESISGQSPLRQRSPSPPSIDHSHLIENFDKQDHPHSRKTSQFLGGLQSKYIKD
SSPTLSPNIQVGDLRRSSQVKDLQGPLPSASFQPRYQQQLSASPTEVNVKTKKLPLSNVS
LARETSEQPATSHTEIASVKSRLFSNMPITSNLPSLLGSRPSQSGGSSPATLISSVSANA
SPSSSALPKRPQRKAGQSIRTSTLPPASSNVSSASAQTLDATNKTSNPLSNLLSSLVAKG
LISTETETPAEVVSRSEDYCDSFSTSSSMPVASLSGSAVVPVPSTKDELDDTAKTSTSLS
ESTSTDIRNVIGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKLQEQFNRHLEWHA
TREREHSGLTKASRWYLKSTDWVAGQAECSSENEFTDSVDSQDKETDESQEDAMVLADEN
QCLCVLCGELFEDVYCQENSEWMFKGAVYVTNSDSDTETGIKDTSSGRGPIIHTRCLSDN
SLSSVLKMEQD
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagaatttgcgaagacctattgatagatccaaagaaccgattttgaagcgacccaga
ttgataaaagatccgcgaaatgcggaatcgagtgctccgatgtttccacagagacaacag
caagttacttctgcttcacggttcagacagaatgatagagacgtcgaaaataatgatgat
ggttaccagcctcagccgctgccgtttcaggagcttgtggcgcagtataagagtgggctt
gcagagctgactttcaattcgaaactgataattaacaacctgactagaattgcggacgaa
aatcgagctgctgagaaggctattgctgctactatatgtgctaacattctagaggttcct
agtgaacaaaagctgccatctctttatctcttagacagtattgttaagaatattgggcgg
gattacataaaattctttgctgccaaactacccgaggtgttctgcaaggcatacaaacag
gttgaacctcctgtccgtcaaagtatgaaacacctttttggaacttggaaaggagtcttt
cctcctcagacccttcaggctatagacaaagaactaggcttcactccagcagtcaatggt
tcgtcttcagcatctgctgcactcaggagtgattcacagacacatcatccatctcacagt
atacatgtgaatcccaagtattttgagagacagcgtgttcaggagtccagcaggagtaat
cagcacactcatagagacccattcaatgaccctgttccagaaaagagcatcagtgcatcc
tatggaggcggtgaacatggttccaatctctcaaggaatatgggcatgggtattggcaga
actgatggcagcataactgagttaggacaccgcaatttgtacaacaaagctgctggtgtt
tcagggaccatatctgggcaaagaaatggtgttggcctgaagcatagtttttcaaatact
gaagctactactatttcggatgcacaacatcagccaacacgaaacataactggcataaag
agaaatgcaatgtcaaatagctggaaaaattccgaggaagaggagtacatgtgggatgac
atgaacattggattgactagtcatggtgtccgtaacaacttgggcaatgatgcttggact
gctgatgatgagaatttggacgctgaagagaaccaccaccaaatcagaaatgtttttggg
acaaatgttgatagagaaatgaccaatagatctcaagccactcaaaagaaacaatttcgg
catcatccgtcgttatcatggaaattgcaggagcatcaatcaattgatgaattggatcag
gaattgggtccctcggatggatgtatgtcaatctctggttccttactaggcaatgcaaat
tcttctgctgccaggatggggaatcgtgctttcctgcccaatgcaagaattggaggacaa
cagtttcattctgtgggatctgaatccatttcagggcagtcacctttgcgacaacgctct
ccttcgccaccaagtatcgaccactctcatctaatagaaaatttcgataagcaagaccat
cctcacagtcgtaaaacatctcagtttttgggaggcctgcaaagcaaatatattaaagat
tcttcacccaccctttctcctaatattcaggttggtgacttgcgaagatcatcacaggta
aaagacttgcagggtccattaccttcagcgagttttcagccaaggtatcagcaacaactg
agcgcttctcccactgaagtaaatgttaagactaagaagctacccttgtccaatgtttct
ttagcccgagaaacctcagagcagccagccacaagtcatacagaaattgcaagtgtgaag
agtagactattctccaacatgccaattactagtaatcttccatctctattagggtctcgg
ccttctcagtcaggcggttcttcccctgccacattaatttcttcagtgtctgccaatgct
tctccatcttcatctgctttgccaaaaagacctcaaagaaaggctggacaatcaataagg
acatctactctaccaccagcttcctcgaatgttagcagtgcctcagcccagacattggat
gctacaaataaaacctcaaatccactttcaaaccttttaagctcattagttgcaaagggt
ttgatatccacagaaactgagacaccagctgaggtggtgtctcgatcggaagattactgc
gacagctttagtaccagtagctctatgcctgttgcttcattgtctggttctgcagttgtc
cctgtcccttctactaaagatgagttagatgatactgcaaaaacatctacgtccttatct
gaatcaaccagcacagatattagaaatgtcattggctttgagtttaagcctaatgtaatc
agaaaattgcatccatctgtaattagtggattatttgatgattttccacatcattgcagc
atttgtggccttaagctcaaactccaagagcagtttaatagacacttggagtggcacgcc
acaagagaaagagaacacagtggtttaactaaagcatcaagatggtatctgaagtcaact
gactgggttgctggccaagctgaatgttcatctgaaaatgagtttactgactctgtagat
tcacaagacaaggaaacagacgaaagtcaagaggatgcaatggttctggcagatgaaaac
cagtgcttatgtgtgctatgtggcgagttatttgaagatgtttactgtcaggaaaatagt
gagtggatgttcaaaggggctgtttacgtgactaattcagatagcgatactgagacggga
atcaaagatacgagttctggaaggggtcctatcattcacacaagatgcttatcagataac
tcgttatcgagtgtcctcaagatggaacaagattga
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