Vicia villosa (hairy vetch): 131625148
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Entry
131625148 CDS
T09680
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131625148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131625148
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131625148
mRNA degradation factors
5'-3' decay
Decapping complex
131625148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
131625148
NCBI-ProteinID:
XP_058752027
LinkDB
All DBs
Position
Unknown
AA seq
819 aa
AA seq
DB search
MVEMDGFGGGDDVGGDLHQFGDVPKEGAVFDATQYAFFGQNARVEEVELGGLEDDDCLPE
SNEEEFLLNNREEVEDVKSLSDIDDLSSALWKLNKVEIGPQSTTIIGARGSRENSTAEWT
RRNNDLNWFDQNPYDSEGSLDGRRLPPQPYSSLAPLQESNSLYRTSSYPEQQRPQQPYLQ
HGSNESVPNWFDQSFRDSETQDSKRWSSQPHSSIAHIEESKSLYSTSLYPDKQQDLHFSN
DSMLAPNSSFTSYPPPGGRSQQASPSHNTGPLNIPYHAVGAQMALSPQNRSHLSNSALQL
GGLNHGAPFGGNIRQFPMGSPLNQRMPNHLVNQAGPYNGVHPNISSGLPMVNKYDQMLGM
MELRDQMPKPAPMGRQNLRFSPQGFDASNHNKFNNGWPRFRSRYMTTEELENIFRLQLAA
THSNDPYVDDYYNQGCLAKKSSGAKLRRHFSPAQIREIPLRASANEPHAFLQVDALGRVP
FSSIRRPRPLLEVDPPNSSRAVGPDQNISEKPLEQEPMLAARVLIEDGLCVLLDVDDIDR
FLQFNKQLQDNGDHLKRKRKGLLEGLSASLQLVDPLGKNGHAVELAAKDDFVFLRIVSLP
KGRKLLARYLQVLFPGGELMRIVCMTIFRHLRFLFGGLPSDPAAAETVINLAKVVSKCIR
EMDLVSLSVCLASVVCSSEPPPLRPLGSPAGDGTSLILASVLERATELLTDPHAASNYNI
RNRSLWQASFDEFFGLLTKYCVNKYDSIMHSFLTQGTPNMAIIGPDVARAISREMPVELL
RASLPHTDDRQKKILLDFAQRSVVGYNSNSGGNGHHVNS
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggtagagatggatggatttggtggcggggatgatgttggtggagatcttcatcaattt
ggggatgttcccaaagaaggtgcagtttttgatgcgacgcagtatgcatttttcggtcaa
aatgcacgcgtagaagaagttgaattgggagggttagaagatgatgactgtttgccggag
tctaatgaggaggagttccttcttaataatagagaagaggttgaggatgttaaatctctt
tctgatattgatgatctcagctctgctttatggaagttgaacaaagttgaaattggacca
caaagcacaacaattattggtgcacggggatcaagagaaaattctacggctgaatggaca
cgaaggaataatgatcttaactggtttgaccagaatccttatgatagtgaaggttctttg
gatggaagaagactgccaccacagccttattcttctcttgcccctttgcaggaatctaat
tccctgtatagaacttcttcatatcctgagcagcaaaggccgcaacaaccctaccttcaa
catggctcaaatgaatcagttcctaattggtttgatcagtcttttcgtgattctgaaaca
caggacagcaaacgatggtcgtcacagccacattcctccattgcacacatagaagaatca
aagtccttgtacagtacatctttatatcccgacaaacaacaggaccttcatttttctaat
gattctatgttggcaccaaattcttcttttacatcttatcctccacccggtggtagatct
cagcaggcttctccaagtcataatacaggccccttaaacattccatatcatgctgtagga
gctcagatggctctatctcctcaaaatcgttctcatttatccaattctgcactacagtta
ggtggattaaaccatggggcaccttttggtgggaacattcgtcagtttcctatgggttcc
cctcttaatcagcgaatgccgaatcacttggtcaaccaggcagggccatataatggagtt
catcccaatatttcttctggtttaccaatggtcaacaaatatgatcagatgctagggatg
atggaactgagggatcaaatgccaaaacccgctccaatgggtaggcagaatctccgattt
tctcctcagggttttgatgcgagtaaccataataaattcaataacggatggccccgattt
aggtctaggtatatgacgactgaggaacttgagaatatatttaggttgcagcttgcagca
acacatagtaatgatccatatgtagatgattattacaatcaaggttgtcttgcgaaaaaa
tcttcaggtgctaaattgaggcgtcacttttcaccagctcaaataagggaaatcccttta
cgagcttctgctaatgagccacatgcttttcttcaggttgatgctctagggagggttcca
ttctcatcaattcgcaggccccgtcctctactggaagttgatccaccaaattcttcacgt
gctgttggtcccgatcaaaacatatcagaaaagcctcttgaacaggagccaatgttggca
gcaagggtcttaattgaagacggtctttgtgttcttcttgatgtagatgatattgaccgt
ttcctacagtttaataagcagcttcaagataatggagatcatttaaaacgaaaaaggaag
ggtcttttggaaggactttcagcctcacttcaactagttgatccacttggaaagaatgga
catgcagttgaacttgctgcaaaagatgactttgtttttctcaggatagtttctctaccc
aaaggtcgaaaactacttgctaggtacctccaagtactttttccaggcggggagctaatg
cgaatagtctgcatgaccatctttcgtcatttaagattcttatttggcggtcttccctcc
gatccagctgcagcagaaactgtaattaaccttgcaaaggtggtctcaaaatgcatccgc
gaaatggatcttgtatcacttagtgtttgcctagcttcagttgtttgttcttctgagcct
ccgcctctacgcccccttggaagccctgctggagatgggacttcccttattttagcatca
gtgctggagagagctactgaacttttaacagatcctcatgctgctagcaactataacata
agaaatcgttcactttggcaggcttcatttgatgaattctttggccttctcaccaagtat
tgtgtcaataagtatgacagcatcatgcattcatttcttactcaaggaacaccgaatatg
gcgatcattgggcctgatgttgctagagctataagtagggaaatgcccgttgagctcttg
cgtgcaagtctacctcacactgatgatcgccagaaaaaaatattacttgattttgctcag
cgctctgtagttggatataatagtaattccgggggtaatggtcaccatgtaaactcataa
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