Vicia villosa (hairy vetch): 131630349
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Entry
131630349 CDS
T09680
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131630349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvo03041
]
131630349
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131630349
Spliceosome [BR:
vvo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131630349
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
SRP54
AAA_30
nSTAND3
AAA_16
T2SSE
ABC_tran
nSTAND_NTPase5
AAA_23
TsaE
NB-ARC
ATPase
Sigma54_activat
PhoH
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
131630349
NCBI-ProteinID:
XP_058757122
LinkDB
All DBs
Position
Unknown
AA seq
832 aa
AA seq
DB search
MKRSRGEEVESLRKYSRQCYLQKREEKKLQQLRDDIIDEHYLFEGVELSESEYRDFTHKQ
QTYDIIANKIGLDVAANNNEYTMPELYDDHQFGINQDKRFSVAMQRYTRDDNDKELNWED
NQIKKATLSFGSKNKRSNDDNHQFVFEDHVDFIKASIMDGHDFQREIALEKSKPKTSVLQ
ALQEDRKNLPIYSFRDELLEAVHNHQIIVIVGETGSGKTTQIPQYLHEAGYTKDGRMIAC
TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSKKTVLKYMTDGMLLREFLVHPQ
LEPYSVVMVDEAHERTLSTDLLFGLLKDLALARPDLKLLISSATLDADKFSTFFDFAPIF
NIPGRRYPVEIYFTQAPEANYLDAAVVTTLQIHATQPSGDILVFLTGQEEIETVEEILKH
RMRAFQAKIGELIICPIYANLPTELQAKIFEPTPKGARKVVLATNIAETSLTIDGIKYVI
DPGFCKMKTYNPKTGMESLLITPISKAAADQRAGRSGRTSPGKCYRLYTAYAFKQELEDN
TPPEIQRTSLANVLLTMYSLGIDCEKLMHFDFMDPPPVDSIIKAMELLYNLGASNKHGKL
TKVGRRMAEFPLDPMLSKMIVASEKYKCSDEIITIAAMLSTGNSIFYRPKDKKVHADNAR
MNFHTGDVGDHIANLKIYNSWKEANYSKQWCYENYIQIRSMKRARDIRDQLARLLEKVEI
EITSSSNDLDAIKKSIASGFFPHSAILQKYGSYRLVKGQQNVHIHPSSGLVEILPKLVLY
HELALTTKEYMRQVTEIKVDWLLEIAPHFYNPMDLEDLTSKKMPRGCGRAGL
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggagtagaggagaagaagttgaatctcttagaaaatattctcggcaatgttac
ttacaaaagcgagaggaaaagaaattacaacaactcagagatgacatcattgacgaacac
tatctatttgaaggtgtggagctttctgaatcagaatatcgtgacttcacgcacaagcaa
cagacttatgatataattgcaaacaagataggcttagatgttgctgctaacaacaatgag
tacacaatgccggaactatacgatgatcatcaatttggaattaatcaagacaagaggttt
tctgtcgctatgcaacgttacactagagatgataatgataaagaacttaattgggaggat
aaccaaatcaaaaaggcaacattgagttttggatccaaaaataaaaggagtaatgatgat
aatcaccagtttgtttttgaggatcatgttgattttatcaaagcttcaattatggatggg
catgattttcaacgggagattgcattggaaaaatctaaacctaagacttcagttttacaa
gctcttcaagaggacagaaaaaacctacctatctattctttccgagatgaattacttgaa
gctgttcataatcaccagatcattgtcattgtcggtgaaactggttccggaaagactact
caaattcctcagtatcttcatgaagctggttataccaaggacgggaggatgattgcatgt
actcagccacgccgcgtagctgctatgagtgttgccgcccgagtttcccaagagatgggt
gttaaactaggacatgaagtcggttattccataagatttgaggattgcacttccaagaag
actgttcttaaatacatgactgatggaatgttgttgagggaattccttgttcaccctcag
ttagaaccttacagcgtcgtaatggtggatgaggcgcacgaaagaacactctcaaccgat
cttttatttggattgttgaaggatttagcacttgctcgccctgatcttaagttgctcata
tcaagcgccactcttgatgcagataagttcagtacgttctttgattttgctccgatattc
aatattcctggcaggcggtatccggttgaaatctacttcacccaagcgccagaagccaat
tacttggatgctgccgttgtcaccacgcttcaaatccatgctactcaaccttctggagat
atacttgtattccttaccggtcaagaagaaattgaaacagtggaagaaatcttgaagcat
cgtatgagagctttccaggctaaaatcggcgagttaattatatgccctatatatgccaac
ctaccaactgaattacaggctaaaatatttgaacccacgcctaaaggggctcgaaaggtt
gtgcttgccacaaacattgcagaaacctcgttgacaattgatgggatcaagtatgtcatt
gatccaggattctgtaagatgaagacttataacccaaagactggaatggagtctttactg
ataactccaatctcaaaagctgctgctgatcaaagagctggtcggtcgggaagaacaagc
ccaggcaagtgctataggctatacactgcttacgcttttaaacaagagttggaggataac
actccaccagaaatacaacggactagcctcgctaatgtactgttaaccatgtatagtctc
ggtattgattgcgagaagttgatgcattttgactttatggatcctccgccggttgattcc
atcatcaaagccatggagctcttatataatctaggtgcttcaaacaagcatggaaagtta
actaaggtaggtagacggatggcagagttcccacttgatcctatgttgtcgaaaatgatt
gttgcttccgaaaagtacaaatgttctgacgagatcataaccatcgctgccatgctttca
accggaaactcaatattttacaggccaaaggataaaaaagtacatgctgacaatgcaaga
atgaactttcacacaggagatgttggtgatcacattgctaatctaaagatctacaattca
tggaaggaagccaattattccaagcaatggtgttacgagaattatatacagatacggagc
atgaagcgtgccagagacattcgtgaccaacttgcacgtttattggagaaggttgagatt
gaaattacttcaagttctaatgacttagatgccataaaaaaatccatagcatctggattt
tttcctcactctgcaatactacaaaagtatggatcttatcggctagtaaaaggtcaacag
aatgtccatatacaccccagttcgggactggtagagattcttcctaaattggttttatac
catgagctagcactcaccactaaggagtatatgaggcaggtgacagagataaaggtagac
tggttgctggagatagccccccatttttacaatcccatggatcttgaagacttgacctcc
aagaaaatgccgcgtggatgtggacgtgccggcttataa
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