Vicia villosa (hairy vetch): 131633681
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Entry
131633681 CDS
T09680
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131633681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131633681
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131633681
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131633681
mRNA degradation factors
3'-5' decay
Ski complex
131633681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
131633681
NCBI-ProteinID:
XP_058760357
LinkDB
All DBs
Position
Unknown
AA seq
1335 aa
AA seq
DB search
MDPIKVSNELSFRVGFSGHSGHLRVEPLSTVERPKPQQSIPDFVLPPAFPRETPESITKF
IEETYLQPRLDPDEFGPEKVGRQWEFDWFDRAKVPLEPSVPRTVVVPIWEPPFRRPVKET
WKPKFEEVSVSDLSSGAVESGPLPRTSAKDFVRGSINNRPFRPGGLDDSQSLERTLPPGA
TNGEWVREILNGGPAQTIPPSLKQGLDLGALKRYPLSWNVYKDANTPKSSLDENSSGLSV
QFDDLFMKAWEADAVGEQEEDGHLSEVETVTLEAEVDMTEVSSKASQSGMSLDDILSADS
EGSKLHLEGFSGEVGHKKKLTWAKLEASEEIADRFHELIPDMALEFPFELDAFQKEAIYY
LEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL
LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVII
MLPRHINIILLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELFKICE
REIFLPQGLKAAKDASRKKHLTAGVSSGPKPGASAGHDNARVQKRENTSRTKQHGTNFSG
TGGSYHNNGNGQSRWRAEASMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADGMTGTDLT
SSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQSLLRRGIGVHHAGLLPIVKEVVEMLFC
RGVIKVLFSTETFAMGVNAPARTVVFDTVRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKI
GTVILMCRDELPEESDLKHVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAE
FHAQKKLPEMQQLLKRKLNQPTQVIECIKGEATIEEYYDLYFEAEKYNSQISEAVLLSPN
AQSFLNIGRVVVIKSESAQDHLLAVIVKTPPTNSKLYIVFVIRPDLPFPVENASVGGKSQ
DKSNTFDQGYLLMPKSRRGILDEYTTSVSARKGKGVVNIKFPHRGSACGMSYEVREVDIK
EFLCICSSKIKIDQVGLLEEVSSSVYAKTVQLLQDLKSDGNKYPPALDPVKDLKLKEMRL
VETYRKWTRLLEKMSQNQCNGCIKLAEHLKLAKEIKAHKEEVIELQFQMSDEALQQMPDF
QGRIDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFENQLDELEPEEVVALMSA
FVFQQKNASEPSLTSRLSEAKNRLYKTAIRLGELQASFKLPISPEEYAQENLKFGLVEVV
YEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNSAAIMGNSALCKKMEIASNAI
KRDIVFAASLYITGV
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatcaaagtatccaacgaactctctttccgcgtcggattttccggccacagc
ggccatctcagggtggagccgctgtccacggtggaacgtcccaagccgcagcagtctatt
cccgatttcgttctgccacctgcctttcctagagagacacctgaatctataacgaagttt
atagaagagacttatctccagccgagattggatccagatgaatttggaccagaaaaagtt
gggaggcagtgggaatttgattggtttgacagggctaaagttccgcttgagccatcagtg
ccgcgaactgtggtagttccaatatgggaacctccgtttcgacgtccagtgaaagaaacc
tggaagccaaaatttgaggaggtgagtgtatctgatctatcatcaggagctgtagaatct
ggaccattgccacgcacttctgcgaaggattttgttaggggaagcatcaacaatcgccct
tttcgtccaggaggtttggatgattcgcaaagtctagaaagaactcttccacctggtgct
actaatggtgaatgggtccgtgaaattttaaatggtggccctgcgcagacaataccgcct
agcctaaagcaaggattggaccttggtgcactcaagcggtatccattgtcatggaatgtt
tacaaggatgccaacacgccaaagagttcattagatgaaaattcgagtggattgtctgta
cagtttgacgacttattcatgaaggcttgggaagcggatgctgttggagaacaagaagaa
gatggtcatttatctgaagtggagactgttacgctggaagctgaagttgatatgaccgaa
gtatccagcaaagctagccagagtggaatgtcacttgatgatatattatcagctgactca
gaaggatcaaaactgcatttggagggatttagtggcgaagtcggacacaagaaaaagcta
acttgggctaagctcgaagccagcgaagaaattgctgatcgctttcatgaacttattcct
gacatggcattagagtttcctttcgaattggatgcatttcagaaggaggctatttattat
cttgaaaagggggaatctgtttttgtggctgctcacacatccgccggaaagacagtagtt
gctgaatatgcatttgccctagcatcaaaacactgcactagagctgtgtatactgctcca
attaaaaccattagcaatcagaaatatagagatttttgtgggaagtttgatgtcgggctt
cttaccggtgatgtaagcttgaggccagaggcttcttgtctcatcatgaccacagaaatt
ttaagatcaatgctctatcgcggtgcagatataattcgagacattgaatgggttatattt
gacgaggtgcactatgtcaatgatgtagaacgaggagtagtttgggaagaagtaattatc
atgcttccaagacacatcaatatcatcctcctttctgccacggttccaaataccattgaa
tttgccgattggattggcaggacaaaacaaaaggaaatccgggttacggggacaacaaaa
agacccgtcccattggagcactgccttttttactctggagaattattcaaaatttgtgag
agggaaatatttctgcctcaaggtttgaaagctgctaaagatgcttcaagaaaaaaacat
ttgactgctggtgttagttctggtccaaaaccaggggcttcagcaggtcatgacaatgct
cgtgttcaaaaacgagaaaatacatctcgaacgaaacagcatggaactaatttctctgga
actggcggcagctatcataataatggcaatggccaaagcagatggagagcagaagcttca
atgtggttgatgcttatcaacaaactctccaaaaagtccttacttcctgtggttatattt
tgtttttctaaaaatcgatgtgataaatctgctgacggcatgactggaactgacctcact
agtagctcagaaaaaagtgagatccgtcttttctgtgacaaagcgttttcaagactgaaa
ggatccgacagaaatttaccacaggttgttcgagtccaaagtcttcttcggagagggata
ggagttcatcatgctggccttcttccaattgtaaaggaagttgttgaaatgctgttttgc
cgtggtgttatcaaggtcttgttttcaacagagacatttgcaatgggagtcaatgcacct
gctagaacggtagtctttgatactgtaaggaagtttgacgggaaggaatttaggcagtta
ctaccaggagaatacactcaaatggcaggtcgtgctggcagaagaggacttgataagatt
ggtactgtcattttgatgtgtcgcgacgaactcccagaagagagtgatttaaaacatgtt
attgttggaagtgcaactcgtcttgaatctcaatttcggctaacctatattatgatcttg
catcttcttcgagttgaagaattgaaggtagaggacatgcttaaaagaagttttgctgaa
ttccatgctcagaaaaaacttccagaaatgcaacagcttttgaagcgaaagcttaatcag
cctacacaggttattgaatgtataaagggcgaggcaactattgaagagtactatgatttg
tatttcgaagccgagaaatacaacagccaaatatcagaggcagttttgctgtctcccaat
gctcaatcatttctcaatattggaagagttgttgtaataaaatcagaatcagcccaggac
cacttgcttgcggtgattgtgaaaactcctcctacaaatagtaaactgtacattgttttt
gtgattagacctgacttgccattcccagtggaaaatgcttcagttggtgggaaatcacag
gacaaaagcaatacatttgaccaaggttatttgttaatgccaaaatcaagacgtggtatt
ttggatgaatatactacatctgtttctgctcgcaaaggaaaaggtgtcgtcaatatcaaa
ttccctcatcgtggttctgcttgtggaatgagctatgaagttcgtgaagtcgatattaaa
gaatttctatgcatatgtagcagcaaaattaagattgaccaagttggacttcttgaagaa
gttagcagttctgtttacgcaaagactgttcagttgctccaggatttgaaatcagatgga
aataagtatcctcctgctctggatcctgtaaaagatctaaaattgaaagagatgagactt
gtggaaacataccgtaagtggactagattattggagaagatgtcccagaatcagtgtaat
gggtgtataaaattggcggaacacctcaagttagcaaaagagataaaagcacataaagaa
gaagtcattgaactccagtttcaaatgtcggatgaagcacttcaacagatgccagacttt
cagggccggatagatgttctaaaggaaattggatgcattgatgaagaccttgttgttcaa
atgaaaggccgagttgcttgcgagatgaattctggagaggaattgatatgtacggagtgc
ttgtttgagaaccagctcgatgaactagaaccagaagaagtagtggcgttaatgtctgct
tttgtgttccagcagaagaatgcatctgagccttccctcacaagcaggctatctgaagca
aaaaatagattgtataaaacagctataagactcggagaacttcaagcatcatttaagctc
ccaataagccctgaggagtatgcccaagaaaatctaaaatttggtctcgtggaagtggtt
tatgaatgggcaaagggtactccctttgctgacatatgtgagcttactgatgttcctgaa
ggtttgatagtaaggaccattgtcaggttggatgagacatgtcgagagttcaaaaattct
gcggcaattatgggtaattctgccctctgcaaaaaaatggaaattgcttctaatgcaata
aagcgtgacattgtgtttgcagctagcttgtatattaccggcgtatga
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integrated database retrieval system
