Vicia villosa (hairy vetch): 131634521
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Entry
131634521 CDS
T09680
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131634521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvo03041
]
131634521
03009 Ribosome biogenesis [BR:
vvo03009
]
131634521
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131634521
Spliceosome [BR:
vvo03041
]
Complex A
U2 snRNP components
U2 related factors
131634521
Complex B
131634521
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
131634521
Ribosome biogenesis [BR:
vvo03009
]
Eukaryotic type
90S particles
Helicases
131634521
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_7
FtsK_SpoIIIE
AAA_30
Flavi_DEAD
AAA_33
AAA_29
Motif
Other DBs
NCBI-GeneID:
131634521
NCBI-ProteinID:
XP_058761172
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDDAAAKMVKTNGGLIGNSLINHWNGKPYSQRYYEILEKRKTLPVW
HQKEDFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRKKMMIACTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVI
ILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKISKEVANMGD
QVGPVKAVPLYSTLPPAMQQKIFDAAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVI
DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK
LGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDASWCYDNFVNNRALKSADNVRQQLVRIMARFNLKLCS
TDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYN
EYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKDEARNR
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagaacggaagagaaaggtgagtttgttcgacgtcgtcgacgacgccgctgct
aagatggtgaaaaccaacggcggcttaatcggcaacagcctcattaaccactggaacgga
aagccttactctcaacggtactatgagattttggagaagaggaaaacacttcccgtttgg
caccagaaagaggatttcttgcaggttttgaaggataaccagactttgattctggttggt
gaaactggtagtggtaaaacaacacagattcctcaatttgttttggaagctgttgattta
gagacaccggataaacgcaagaagatgatgattgcatgtactcagcctcgtagagtggct
gctatgtctgtttcgcgccgtgtggctgaagagatggatgttactattggggaagaggtt
ggttatagcatccgatttgaagattgtagtagtgcaaggacagttttgaagtatttaaca
gatggtatgcttttgagagaggcaatgacggatccacttttggaacgatacaaagtaatt
attcttgatgaggcacatgaaaggactttggctacagatgtgttatttggccttcttaag
gaagttcttaaaaacagacctgacttgaagttggttgttatgagtgctacacttgaagct
gaaaagtttcagggatatttttttggagcccctctaatgaaggttcctggaaggttacat
cctgttgaaattttttatactcaagaaccagaaagagattacttggaggcagctattagg
acagtggtgcagattcacatgtgtgaacctgctggagacatacttgtttttcttactgga
gaggaagaaatagaagacgcatgccgcaaaatatcaaaagaagttgcaaatatgggggat
caggtgggccctgtgaaagcggtgccattgtattctactcttccgccagctatgcagcag
aagatttttgacgcagctcctcctccagttaaggagggaggccctcctggaaggaagatt
gtggtatcaacaaacatagcagaaacttccttgacaattgacggtatagtctatgttatt
gaccctggatttgctaagcagaaggtttataatcctcgagttcgtgtcgagtctttgttg
gtgtcaccaatatcaaaggctagtgcacatcagagatctggtcgtgccggaagaactcag
ccagggaaatgctttagactttatactgagagaagtttcaataatgatcttcagccgcaa
acctatcctgaaattttgagatctaatctagctaacacagttcttacattgaagaaattg
ggtatagacgatttagtgcattttgatttcatggaccctcctgcccctgaaacattaatg
cgggctttggaagtgttgaattacttgggtgcattggatgatgagggtaacttaacaaag
ctgggtgagatcatgagtgagtttccattggaccctcagatgtcaaagatgcttgttgtt
agtcctgagttcaactgttcaaacgagattctttcaatttctgccatgttgtcagtaccc
aattgctttatccggcctagggaggcacaaaaagctgcggacgaagcgaaagctaggttt
ggacacattgatggagatcatctcacactgttgaatgtataccatgcctacaagcaaaac
aatgaggatgcatcttggtgctacgacaactttgtcaataacagggcacttaaatcagct
gataatgttcgacagcagctagtgcgtatcatggctcggtttaacctgaagttatgcagc
actgacttcaatagtcgcgactattacgtcaacattagaaaggcaatgctagcaggatat
ttcatgcaggtggctcatcttgaacggacaggacactatttgacagtgaaagacaaccag
gtggtacacttacatccatcaaattgcctggatcacaagcccgaatgggttatctataat
gaatatgttctcaccagtcggaattttatacgtactgtgacagatatacgcggtgaatgg
ttagtagatatagcaccacattactatgatttgtctaattttccacaatgtgaagcgaag
cgagttcttgaaaagctgtacaagaaaagagagaaggaaaaggatgaagcccggaatcgg
aaatga
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integrated database retrieval system
