Vicia villosa (hairy vetch): 131641088
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Entry
131641088 CDS
T09680
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131641088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvo03041
]
131641088
03009 Ribosome biogenesis [BR:
vvo03009
]
131641088
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131641088
Spliceosome [BR:
vvo03041
]
Complex A
U2 snRNP components
U2 related factors
131641088
Complex B
131641088
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
131641088
Ribosome biogenesis [BR:
vvo03009
]
Eukaryotic type
90S particles
Helicases
131641088
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_7
FtsK_SpoIIIE
AAA_30
Flavi_DEAD
AAA_33
AAA_29
Motif
Other DBs
NCBI-GeneID:
131641088
NCBI-ProteinID:
XP_058767394
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDDAAAKMVKTNGGLIGNSLINHWNGKPYSQRYYEILEKRKTLPVW
HQKEDFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRKKMMIACTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVI
ILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKISKEVANMGD
QVGPVKAVPLYSTLPPAMQQKIFDAAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVI
DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK
LGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDASWCYDNFVNNRALKSADNVRQQLVRIMARFNLKLCS
TDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYN
EYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKDEARNR
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagaacggaagagaaaggtgagtttgttcgacgtcgttgacgacgccgctgct
aagatggtgaaaacaaacggcggcttaatcggcaacagcctcattaaccactggaacgga
aagccgtactctcaacggtactatgagattttggagaagaggaaaacacttcccgtttgg
caccagaaagaggatttcttgcaggttttgaaggataaccagactttgattctcgttggt
gaaactggtagtggtaaaactacacagattcctcaatttgttttggaagctgttgattta
gagaccccggataaacgcaagaagatgatgattgcatgtactcagcctcgtagagtggct
gctatgtctgtttcgcgccgtgtggctgaagagatggatgttactattggggaagaggtt
ggttatagcatccgatttgaagattgtagtagtgcaaggacagttttgaagtatttaaca
gatggtatgcttttgagagaggcaatgacggatcctcttttggaacgatacaaagtaatt
attcttgatgaggcacatgaaaggactttagctacagatgtgttatttggccttcttaag
gaagttcttaaaaacagacctgacttgaagttggttgttatgagtgctacacttgaagct
gaaaagtttcagggatatttctttggagcccctctaatgaaagttcctggtaggttacat
ccagttgaaattttttatactcaagaaccagagagagattacttggaggctgctattagg
acagttgtgcagattcacatgtgtgaacctgctggagacatacttgtttttcttactgga
gaggaagaaatagaagatgcgtgccgcaaaatatcaaaagaagttgcaaatatgggggat
caggtgggccctgtgaaagcggtgccgttgtattctactcttccgccagctatgcagcag
aagatttttgatgcagctcctcctccagttaaggagggaggccctcctggaaggaagatt
gtggtatcaacaaacatagcagaaacttccttgacaattgacggtatagtctatgttatt
gaccctggatttgcgaagcagaaggtttataatcctcgagttcgtgtcgagtctttgctg
gtgtcaccaatatcaaaggctagtgcacatcagagatctggacgtgctggaagaactcag
ccagggaaatgctttagactttataccgagagaagtttcaataatgatcttcagccgcaa
acctatcctgaaattttgagatctaatctagccaacacagttcttacactgaagaaattg
ggtatagatgatttagtgcattttgatttcatggaccctcctgcccctgaaacattaatg
cgggctttggaagtgttgaattacttgggcgcattggatgatgagggtaacttaaccaag
ttaggtgagattatgagtgagtttccattggaccctcagatgtcaaagatgcttgttgtt
agtcctgagttcaactgttcaaatgagattctttcaatttctgccatgttgtcagtaccc
aattgctttatccggcctagggaggcacaaaaagctgcggatgaagcgaaagctaggttt
ggacacattgatggagatcatctcacactcttgaatgtataccatgcctacaagcaaaac
aatgaggatgcatcttggtgctacgacaactttgtcaataacagggcactgaagtcagct
gataatgttcgacaacagctagtgcgtatcatggctcggtttaacctgaagttatgcagc
actgacttcaatagtcgcgactattacgtcaacattagaaaggcaatgctagcaggatat
ttcatgcaggtggctcatcttgaacggacagggcactatttgacagtgaaagacaaccag
gtggtacacttgcatccatcaaattgcctggatcacaagcccgaatgggttatctataat
gaatatgttctcaccagtcggaattttatacgtactgtgacagatatacgcggtgaatgg
ttagtagatatagcaccacattactatgatttgtctaattttccacaatgtgaagcgaag
cgagttcttgaaaagctgtacaagaaaagagaaaaggaaaaggatgaagcccggaatcgg
aaatga
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