Vicia villosa (hairy vetch): 131641350
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Entry
131641350 CDS
T09680
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131641350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131641350
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
131641350
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GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
131641350
NCBI-ProteinID:
XP_058767640
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All DBs
Position
LG1:70810103..70822768
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AA seq
935 aa
AA seq
DB search
MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGSPSCTVCDSSGARLSDSASTILVVDTNV
VLNQIDLLENSAIDDVVVLSIVLEEVKNKNMSVYNRLRAICSNSNRKFFVFSNEYHRDTY
VKEMSGETKNDRNDRAIRVAAQWYQKHLGGAVKVLLVTNDKENKRKASEEGICAETVESY
VKSLDRPDLLDLLVRPSSEDAEMEDVEDHRPSKRKVIYSEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAVELLPEDQWQGEKSLSIVGE
EEEDEDEDVHLAPNSADDAPRTTTQQGSTGVTNAGSSRPSGRIVGIIKRNWHSYCGSLEP
MPMPGGSRGVAYALFVSKDRRFPKIRIQTRQLENLLDKRIMVSVDSWDRQSRYPSGHYVR
TIGEIGDRDTESEVVLIENDINSRPFSAQVLACLPPLPWSVSSEDLSIPFRQDLRHLRVF
SVDPPGCKDIDDALHCYALPNGNFEVGVHIADVTNFVFPGTPLDDEASQRGTSVYLVERR
IDMLPKPLTEDVCSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSTAALSYVEAQAR
MDDSRLMDPVTTDLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTKEMLEPLLRVSAAIGLNLDVS
SSKALADSLDLAVGGDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLATPLYTHF
TSPIRRYADVIVHRLLAASIGISKLPSVFQDRLQLTSIADNLNYRHRNAQMAGRASVELH
TLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTTRAEKGSGEWYVDEQEQKIK
KMDGSLSYSILQTVQIHMEVVEPQPNRPKLQLTLI
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgcttcacaacaagtctttcgttaagaaaaccaaaggtggcaaagtcatgaagcaagtg
agggaacactacttgcgggatgatatatattgtggttctccgtcttgcactgtctgcgat
tcttctggtgctcgacttagtgattctgcttccacaattcttgttgttgacaccaatgtt
gttcttaatcagattgatttgctggaaaattcggccattgatgatgttgttgtactgtcc
attgtgctggaagaggttaagaacaagaatatgtctgtttataaccggttaagagctatc
tgtagcaattcaaataggaaattctttgttttttccaatgagtatcacagggatacatat
gttaaggaaatgagtggggaaactaaaaatgacaggaatgatagagctattcgagtggct
gcacagtggtatcagaagcatctaggtggtgcagtaaaggttttgcttgtaactaatgat
aaagagaataaaaggaaagctagtgaagagggcatttgtgcagaaacagttgagtcatat
gtcaagtctttggaccgacctgatttacttgatctgcttgtgcggccttcatctgaagat
gcagagatggaagatgttgaagatcacagaccatccaaaaggaaagtaatttattcagag
cataagccaatgtcagaaatcacatctggtttgcatcgtggaatatatcatcaagggaaa
ctccgtgtaaaccgttacaatccatttgaagcatatgttgggagtgagagcattggtgat
gaaataattatatatgggcgctctaacatgaaccgagcttttgatggtgatattgtggca
gttgaacttctgcctgaggatcaatggcaaggggagaagtctctatctatagttggcgaa
gaagaagaggatgaggatgaagatgttcatctagccccaaatagtgctgatgatgcaccc
agaactactactcagcaaggttctaccggagtaacaaatgctggatccagtcgtccctct
ggtcgcattgttggtattataaagagaaactggcactcgtattgtggatctttggagcca
atgcctatgcctggaggaagtcgcggtgttgcctatgcattgtttgtctctaaagatcgt
agatttcccaagattcgtatccaaacccgccaacttgagaaccttttggacaagaggatt
atggtatcagttgattcttgggatcgtcaatctcgatatccatctggccattatgtgcgg
actataggagagataggtgatagagatactgaaagtgaggtggttttgatagaaaacgat
ataaactcaaggccattctctgcacaagtgctagcgtgtttgccaccattgccatggtca
gtctcttcggaagatttgtccattccatttaggcaggatttgcgtcatttgcgtgtcttc
agtgtggaccctccaggctgcaaggatattgatgatgcactccactgctatgctcttcca
aatggaaactttgaagttggagttcacattgcagatgttacaaattttgtgtttcctggc
actccactcgatgacgaggcttctcaaaggggcacatctgtctatcttgttgagcggaga
atagatatgcttccgaaacctttaacagaggatgtatgttctcttcgttctgacgtggaa
aggctagcattctctgtcatatgggaaatgacacctgaagcagacattatttccaccaga
tacacaaaaagtgtcataaaatctacggcagcattatcttatgttgaagcacaagcgagg
atggatgatagccgattgatggatccagtaactaccgatttgagaaatatgaatagttta
gccaagaaaatgagattaaggcgtattgagagaggagctttgactcttgcatctgcagaa
gtcaaatttcaaattgacaccgagactcatgatccccttgatattggcatgtaccaaatc
cgggaagccaatcagatggtggaggagtttatgcttgctgctaatgtttctgttgcacaa
caaattcttaaaagctttcctttgtgttcgctattaaggcgacatccgactccaactaaa
gagatgcttgaacccttgctacgtgtttctgctgcaattggcctgaacttggatgtctca
tcatctaaagcattagctgattctcttgaccttgccgtgggtggtgatccatacttcaac
aagttgatccgtattcttgccactagatgcatgagtcaggcagtttatttctgtagtgga
gatctcagcccaccagaatatcatcattatgggcttgcaactcctttatatacccatttc
acatcacctataagaagatatgcagatgtcattgtacacaggctacttgctgcttctata
ggaatatccaagttgccatctgtatttcaagacaggctgcaactcaccagtattgcagac
aatttaaattataggcacaggaatgctcagatggcagggcgggcctctgtagagctgcat
actctcatttatttccggaagaggccaacagatacggaggctaggatagtaaagataaga
tctaatggattttttgtgtttgttcccaaatacggtatcgaaggacctgtatatttgaca
acaagagctgaaaagggtagtggagaatggtatgtagatgaacaagagcaaaagattaaa
aagatggatggaagcctttcatacagcattttgcagacagtacaaattcacatggaggtt
gtggagccccagcctaaccggccaaaacttcagcttactctcatctag
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