Vicia villosa (hairy vetch): 131643187
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Entry
131643187 CDS
T09680
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131643187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131643187
03012 Translation factors [BR:
vvo03012
]
131643187
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131643187
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131643187
Translation factors [BR:
vvo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131643187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
AAA_23
ATPase
Dicer_dimer
AAA_11
NPHP3_N
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
131643187
NCBI-ProteinID:
XP_058769325
LinkDB
All DBs
Position
LG1:complement(79162543..79175149)
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AA seq
1170 aa
AA seq
DB search
MFPTPSFPKTLKPYLPFLPMKDRPSLSSHGAIYVPPHHRLRSVITSANSPTPLSAKLREN
HTPTPTTPQTTLPDKRFVSAYDDVVSQEWVHREVQVPSLPSGFPNDIMQEWKPKFTTLLK
DESKQELISREKKDRRDFDEISVLASRMGLYSHMYSKVAVFSKVPLPNYRYDLDERKPQR
EVSMPITVFRRVGAHFEEYLSRKPRKNKSFSDLSSSDGSLGTDEGLFEQPEPLASNKAVV
EKILWQRSLQMRDVQQAWQGSSEGKRMLEFRRNLPAYKEKEAILSVISENQVVIISGETG
CGKTTQIPQFILESEIESVHGAACNIICTQPRRISAMSVSERVAFERGEKLGESVGYKVR
LEGMKGRDTHLLFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPR
RPELKLILMSATLDAELFSSYFNGAPIVNISGFTHPVRTLFLESILETTGYRLTPSNQID
DYGQERLWKVNKQAPRKRKSQIASAVEDAIRSADFKDYSLQTQESLSCWNPDCIGFSLIE
YILCNICEDERPGAVLVFMTGWDDICSLKEKLQAHTVLGDPNRVLLLTCHGSMASAEQKI
IFEEPEDGVRKIVLATNIAETSITIDDVVFVLDCGKAKETSYDALNNAPCLLPTWISKAS
AHQRRGRAGRVQPGVCYHLYPRCVYDGFAEYQLPEILRTPLQSLCLQIKSLKLGSISDFL
SRALQSPEILAVQNAVEYLKIIGALDENENLTILGHYLTKLPMEPKLGKMLILGAILNCL
DPILTVVAGLSVRDPFLTPLDKKDLAEAAKAQFSGAYSDHLALVRAYEGWKVAEIDLGGY
EYCWKNFLSFQSMKAIDALRREFKGLLTDIELVDSNTTTCNTWSYDVNLIRAVICYGLYP
GICSVLHNEKSFTLKTMEDGQVLLNSNSVNARETKIPYPWLVFNEKVKVNSVFLRDSTAV
SDSVVLLFGGSLSKGDADNHIKMLGGYLEFFMEPTVADMHQSIRRELDDFIQSKLLSPTM
SIHSYHNLLSAVRSLISNDSCEGRFVFGRQVLKPSKKSMIPSHPASLASLGSRTESGPGG
DNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRSSVELNGVEIMGQPCNNKKSAEKDAASE
ALQWLMGKQAGREYIDHMSMFLKKSKKDHN
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgttccccactccatcttttcccaaaaccctaaaaccctatcttccatttctccccatg
aaggaccgcccctcgctgtcctcccatggcgccatctacgttcctccgcaccaccgcctc
cgctccgtcatcacctccgctaactcccctactccactctctgccaagcttcgcgaaaat
cacacacccacacctactactcctcaaaccaccttacctgacaagcgcttcgtttctgct
tacgacgacgtcgtttcccaggaatgggtccatcgtgaagttcaagttccttcactaccg
agtggtttccccaatgatatcatgcaggagtggaagccaaaatttacaacgctgttaaaa
gacgagagtaagcaggagttgatttcaagggagaaaaaagataggcgtgattttgatgaa
atatcagttttggcaagtagaatggggttgtatagccatatgtattcgaaggttgctgtc
ttcagtaaggtgccacttcctaactatagatatgatttggacgaaaggaagcctcagagg
gaggtgagcatgcctatcactgtgttcaggcgggttggtgcacattttgaggaatacctt
agccgaaagcccaggaaaaacaaaagcttttcagatttgtcaagcagtgatggcagtctt
ggtacagatgaagggctttttgaacaacctgagccgctagcatccaataaggctgttgtg
gagaaaattctctggcagagaagcttacaaatgcgggacgtgcaacaagcttggcagggg
tcatctgaaggaaaaagaatgctagagtttcgtagaaatctccctgcttataaagagaaa
gaagcaatattatcggtcatatcagagaatcaggtagtcatcatttcaggcgaaacaggt
tgtggcaagacaacacaaattcctcaatttattctggagtctgagatagaatcagttcat
ggagctgcttgtaatattatatgcacacagccaagacgcatttcagccatgtctgtttct
gaaagagttgcttttgagagaggggagaaattgggtgaatctgttggatataaagttcga
ttggagggaatgaaagggagagatacccatcttctcttttgcaccacaggtatcttatta
agaagattactggctgatagaaaccttaaaggggtaactcatgttattgtggatgaaatt
catgagcgtgggatgaatgaagattttctgcttattgtccttaaagaactccttccccgt
cgacccgaactcaaactaattttgatgagtgctaccctagatgcagagctcttctcttcg
tattttaatggggctccaatagtgaatatatcgggctttacacaccctgttagaactctc
tttttggagagcattcttgaaaccacgggctatcggttgactccttctaatcaaattgat
gattatggccaagagaggttgtggaaagtgaacaaacaagccccaagaaagaggaaaagc
caaattgcttctgccgtagaggatgcaattagatctgctgatttcaaagattacagcctt
cagacacaggagtctttgtcatgttggaatcctgactgtattggttttagtctcatagaa
tatatcctgtgcaatatttgtgaggatgaaaggcctggcgctgttttggttttcatgact
gggtgggatgacatctgctctctgaaagagaagctccaagcgcatactgtcttgggagat
ccaaaccgtgttttgttgcttacatgtcatggctcaatggctagtgcggagcaaaaaata
atatttgaagagcctgaagatggagtaagaaaaatagtgctagcaacaaatattgctgaa
acgagtatcacaatagatgatgttgtttttgttctggactgtggaaaagcaaaagaaaca
tcatatgatgcactgaataatgcgccttgtttgcttcctacatggatctctaaggcatct
gctcatcaaagaagaggaagagctggccgtgttcaacctggagtgtgttaccatctctat
cctagatgtgtatatgatggttttgcagagtatcaattgccagaaattttgagaacacct
ttgcagtctctctgtttacaaatcaaaagtctaaaacttggaagtatatccgatttcttg
tctagggctttgcaatctcctgagatactcgcggtacaaaatgcagttgaatatttaaaa
ataattggggctttggatgagaatgagaatctgactattctaggacactatttgacgaag
cttcccatggaacccaaacttggcaaaatgcttatattaggtgctatcctgaactgcctg
gatcccatattaactgttgttgctggtcttagtgtgagggatccttttctaacaccactg
gacaaaaaagatcttgcagaggcggcaaaagctcaattctctggtgcatacagtgaccac
ctagcacttgtacgcgcttatgagggttggaaagttgctgagatagacttgggtggatat
gaatattgttggaaaaactttctttcattccaatccatgaaagctattgatgctcttcgg
agggagttcaaaggcctgcttacagatattgaattagttgatagcaacacaacaacctgt
aacacatggagctatgatgtgaatcttatccgagcagttatttgctatggtctatatcct
ggaatttgttctgtgctgcataatgagaagtcattcactttgaaaacaatggaggatggt
caagtgctcttaaattcgaactcggttaatgctcgggaaactaaaattccatatccgtgg
ttagtttttaatgagaaggttaaagtgaactcagtttttctccgtgactcaacagccgtg
tctgattcagtggtgcttttgtttggtggaagcttatcaaaaggagacgctgataatcac
ataaaaatgttaggaggatatctggagtttttcatggaacctactgttgctgatatgcat
cagagtataaggagagagcttgatgacttcattcagagcaaactactttctccgacaatg
agcatacactcatatcataacctcctatccgcggtacgatctctgatttccaatgactca
tgtgaaggcagatttgtatttggtcgccaggtccttaaaccatcaaagaaatctatgatc
ccctcacacccagcatcgttggcatcattgggttcaaggacagagagtggacctgggggt
gataattctaaaagccagctccaaactttgcttacaagagcaggatatgctgcacctatc
tacaagacgaaacagttgaagaacaaccagtttcgatcttcagttgagttaaacggagtg
gagataatgggccaaccttgtaacaataagaagagtgcagagaaagatgctgcatctgaa
gcgctgcaatggttaatgggcaagcaagctggccgtgaatatatcgatcacatgtcaatg
tttctgaaaaaaagtaagaaggatcacaattaa
DBGET
integrated database retrieval system
