Vicia villosa (hairy vetch): 131643872
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Entry
131643872 CDS
T09680
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03022
Basal transcription factors
vvo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131643872
09124 Replication and repair
03420 Nucleotide excision repair
131643872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvo03021
]
131643872
03400 DNA repair and recombination proteins [BR:
vvo03400
]
131643872
Transcription machinery [BR:
vvo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131643872
DNA repair and recombination proteins [BR:
vvo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131643872
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
DUF3997
Motif
Other DBs
NCBI-GeneID:
131643872
NCBI-ProteinID:
XP_058770200
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Position
LG1:112262518..112277738
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AA seq
586 aa
AA seq
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MSSVQQVVKRAKYKTTVKDPGTPGVLKLTREKFVFKPNDPTSKNKLEADFRLIKNHKHTK
EGSNKPPWLNLTHSQGSYIFEFESFSDLHICRELVGSALSKHVEPPKVVSDEQLSASEMT
LRIKLLQEDSKLQKLHKELVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDT
KPTSDGRINQVKFQLTPEIKYQIFTLKPAVHQAFRSFVPSKMSEVDFWNKYFRAEYLHST
KNAIAAAAEAAEDEDLAVFLKDDEILENEARKKIRLVDPTLDMEADQGDDYSHLPDHGIF
RDGSKETFEAQNTLYRRTLLQDLNRQSEVVLEGKTLDTDMEHPKTVAEVLARRNQRFDGV
IEEERRIRISKMTPIDDLQAQDDNAFAPLCIKDPRDYFDFQQANAVKTLDDSLAANLKTR
SNLGYEEAYGSLRESISNIKTMGLRDPLLSPDVAFKVLAGLTKNISSTKSNLGKSSQESV
LDILPNTTKEKLLDHWVCSQELLKHFWSSYPITTQSLANKARRLKDAISQLYAKLEEIKV
SSQSDLRHQVSLVVHPMQQALDAALLHYEADLGKRNAKGSKPNGYV
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggtgcaacaagttgttaagcgcgccaaatacaaaaccactgtcaaagatcct
ggcactcccggcgtactcaaattgactcgagaaaagtttgttttcaagcctaacgatcca
acatcaaagaacaagctcgaagccgatttcagattaattaaaaatcataaacacaccaaa
gagggatcgaacaaaccaccgtggcttaaccttacacattctcagggaagctacatcttt
gagtttgaaagcttttcagatcttcatatttgccgggaattggttggtagtgcccttagc
aagcatgtagaacccccaaaagttgtttccgatgaacagcttagcgcttctgaaatgaca
ctgagaattaagctattgcaagaagatagtaagttgcagaaacttcataaagaacttgtg
gctagcggtaagcttacagaatcagaattttgggctacaaagaagaaattgcttgaccaa
gatgaaagcagaaagttaaaacaaaggattggatttaaaaattctttgatctttgacaca
aagcctactagtgatggtcggataaaccaggttaagtttcaattgacaccggagataaaa
tatcagatttttaccctcaaaccagcagttcatcaggcattccgcagttttgtacccagt
aagatgagtgaggtagatttctggaacaaatactttagagctgaatatctccatagtacc
aaaaatgctattgcggcagctgccgaggctgctgaagatgaggatcttgctgtttttttg
aaagatgacgagatattagaaaatgaagctcgaaagaagattcgactggtcgatccgact
ttagacatggaagcagaccaaggagatgattactcccatcttcctgatcatgggatcttc
cgcgatggtagcaaagaaacatttgaagctcaaaatactttgtatcggcgaacattgttg
caagatcttaatagacaaagcgaggtggttcttgaaggaaaaactttagatacagatatg
gaacatccaaaaacagtggcagaagtgcttgctcgaagaaatcaaagatttgatggggtt
atagaggaggagaggcgaatcagaatttctaagatgacaccaattgatgatcttcaggca
caagatgataatgcttttgcaccactttgtatcaaggatccccgtgactattttgatttt
caacaagcgaatgcagtgaaaactttggatgattccctagctgctaatttgaaaacaaga
agcaatttgggttatgaggaagcatatggctctttgagggagtcgatatctaacatcaaa
actatgggattaagggatcctctattgagccctgatgttgcctttaaggtccttgctgga
ttgaccaaaaatatctcaagcaccaaatcaaatcttgggaaaagttcacaggagagtgtc
cttgatatattgcccaacacaactaaggagaaactactagatcattgggtttgcagtcag
gaattattgaagcacttttggtcttcctatccaataacaacacaaagccttgctaataag
gccagaagactgaaagatgccatatcacaactatatgctaaacttgaggaaataaaggta
tcttcacagtcagacctgcggcaccaggtttcccttgttgtccatccaatgcagcaggct
ctggatgctgccttgttacattacgaagctgatcttgggaaaagaaatgctaaagggtcg
aagcctaatggttatgtttaa
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