Vicia villosa (hairy vetch): 131648469
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Entry
131648469 CDS
T09680
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131648469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvo03041
]
131648469
03009 Ribosome biogenesis [BR:
vvo03009
]
131648469
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131648469
Spliceosome [BR:
vvo03041
]
Complex A
U2 snRNP components
U2 related factors
131648469
Complex B
131648469
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
131648469
Ribosome biogenesis [BR:
vvo03009
]
Eukaryotic type
90S particles
Helicases
131648469
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
AAA_22
Helicase_C
HA2_N
AAA_19
DEAD
Helicase_RecD
NB-ARC
DUF3246
Motif
Other DBs
NCBI-GeneID:
131648469
NCBI-ProteinID:
XP_058774205
LinkDB
All DBs
Position
LG2:complement(2766712..2769467)
Genome browser
AA seq
720 aa
AA seq
DB search
MEILNGANINRWTRKPYSEKCIKILEKRKMLAIWQHRDEFLNAFRANQVLALVAQTGSGK
STQIPQFILDDMVTSSEMAIACTQPQKVSVMSVSHRVAEEMGVTIGEEIGYKVKFENRTS
SRTVLKYVQDEMLLKEAMTDPLLQRYKVIIIDDIQERTLATDLLLGYLSPLITKRPDLKL
VLMSTGLESEKFKSFFQEFYPSIHIMKVPKRLNPVEIVYSSHNELDRNNNLAAIIKTVVN
IHRHEPHGDVLVFLSEEEDVENACHKISREISKLGDLVGPMKLIPLYSCLPATMQHKIYE
ETCGRKIVVTTDIVESSLTIDGISYVVDSGFVKKKVFDPKLYMDSALVMSAISKASADMR
SEHAGRTIRGKCFRLYTEESYNNLDQETCPEILRSNLTNMILSFLKLGIDDFLFFGYVDS
PDMESLVRAFVTLKFLGAFDDKNCKITYLGEIMSAFPLEPQMSKMLLVSPEFNCSEEILS
ISSMLSVPNCFVGSREEQKEVKAKFHSTHGDHLTLLNIYRAYKQNKEDLTWCNDNFINYW
ALKEADNIRQDLTRIMMATFDLNLCSTDINISINDIRKSILAGYFLHVAHLDTTGNYITF
EGNKVMNFHPSSNCLDDHKPEWIIFNEFVATDYNFIPIVTTIRGDWLVDSAAPWSTYYQL
SKFPNSEAKCILERLSAYVSYARMLKERKLADGKLGKHANISTFHRLLPYQHNRKRKQRL
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggaaattttgaatggtgctaacattaacagatggactcgcaaaccttattcagagaaa
tgcattaagattttggaaaagagaaagatgctcgcaatttggcaacacagagatgagttt
ttgaatgcttttagggccaaccaagttttggctcttgttgctcaaactggtagtggtaaa
tccacacagattcctcaatttattttggacgacatggtgacaagttcagagatggcgatt
gcgtgtactcagcctcagaaagtttctgtaatgtctgtttcacaccgtgtggcggaagag
atgggtgtcactattggggaagagataggttacaaagtcaaatttgaaaatcgcacaagc
tcgagaacagttttgaagtatgttcaagatgaaatgcttttgaaagaagcaatgacagat
ccacttttgcaacgttacaaagttataattattgacgacatacaagaaagaactttggct
acagatttgctacttggatatttatctccactgattacaaaaagacccgacctgaagttg
gtacttatgagtacaggtcttgaatctgaaaagtttaagagcttttttcaagaattttat
cctagtattcatattatgaaagttcctaaaaggttaaatcctgtggaaattgtctatagt
agccataatgaacttgacaggaataataacttggctgctattattaagactgtggtgaat
atacatagacatgaacctcatggagacgtacttgtgtttttgagtgaagaggaagatgtt
gaaaatgcatgccacaaaatatcaagagaaatttctaaactaggagatcttgtcggccct
atgaaactgattcctctatattcctgtctacctgcaacaatgcaacacaagatttatgag
gaaacttgtggaagaaagattgtggtaacaacagacatagtagaatcttccttaacaatt
gatggtatttcctatgttgttgactcgggatttgttaagaaaaaggtttttgaccctaaa
ctatatatggactctgcacttgtaatgtcagcaatatcaaaagcaagtgcggatatgaga
tcagagcatgctggtagaactataagggggaaatgttttcgactttatacagaagaaagt
tacaacaatcttgatcaagagacatgtcctgaaattttgagatcaaatcttaccaacatg
attctctctttcctgaaacttggtatagatgattttttgttttttggttacgttgactct
cctgatatggagtctctagtgcgcgcctttgtaacattgaagttcttgggtgcatttgat
gataaaaattgcaagataacatatcttggtgagattatgagtgcgtttcccttggaacct
caaatgtcaaaaatgctacttgttagtcctgaattcaactgttcagaagagatattatca
atttcttccatgctatcagtacccaattgctttgtgggatctagagaggaacaaaaagaa
gtaaaagctaagtttcacagcactcatggagatcatctcacactcttgaacatctaccgt
gcatacaaacaaaataaagaggatctcacttggtgcaatgataatttcattaattattgg
gcactaaaagaagcagataatataagacaagacttgacgcgtatcatgatggctacattc
gatctgaatttatgtagtactgacattaacatcagtatcaacgacataagaaagtctatt
cttgctggatatttcttgcacgtagcacatttagatactactggaaactacatcacattt
gaaggcaataaggtgatgaattttcatccatcatccaattgcttggatgaccacaagcct
gaatggatcatttttaatgaatttgttgctactgattataattttattcctatagtaaca
acaatacgtggtgattggctggtcgattcagcagcaccatggtcaacgtactaccagtta
tcaaaatttcctaatagtgaagcaaagtgtattcttgagagacttagcgcatatgtttcg
tatgcaagaatgttgaaggaaagaaaacttgcagatggaaagcttggaaagcatgcaaac
ataagcacattccatcgattgttaccttatcaacacaataggaaaagaaaacaaagactt
tag
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