Vicia villosa (hairy vetch): 131652651
Help
Entry
131652651 CDS
T09680
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131652651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131652651
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
131652651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_14
TPR_8
TPR_9
TPR_19
TPR_12
TPR_17
TPR_CcmH_CycH
ARM_TT21_C
BTAD
TPR_7
Motif
Other DBs
NCBI-GeneID:
131652651
NCBI-ProteinID:
XP_058778563
LinkDB
All DBs
Position
LG2:complement(156798474..156814354)
Genome browser
AA seq
1178 aa
AA seq
DB search
MASQTPTDEEDLFRRLQDSPDDASLHFDIGLLLWNKEHEEDAKEKATQHFILSAKLNPKN
GESFKYLGHYYRCVSLDAQRALKCYQRAVAIDPDDYESGEALCDLLDQEGKDSLEVAVCL
EASEMSPRAFWAFRRLGFLLVHQKKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRLGRF
TAAVKSYGRAIELDNKMVFALVESGNISLTLGQFKKGVEQFQQALEILPDCVPAQFGLAL
GLLSLAKDCISIGAYQWGASLLEEASEVARESARSFTNISCIWKLHADIQLAYARCNPWI
EEVQQLESNKEAFSASINSWRKTCFLAAGRAKFSYQRALHLSPWQANIYSDIAVTSDLIT
SLSKNYTQDSSARQLAEKMSIGALLLEGHNYEFWVALGCLSNHNELNQHALIRGLQLNVS
LAVAWGYLGKLYLKADEKQLARQVFDRARSIDPSLALPWASMSAESYVSKESAPDEAFES
CSRAVQIMPLAEFQIGLTKLALLSGHLASSQVFGAIQQAVQHSPHYPESHNLHGLVCEAR
KDYKSAATFYRLARHAVSIGSESNQNSHIRDISINLARSLSKAGNAADALQECENLNKEG
LLDEEGFQVYAFSLWQHGEYDLALSVAGSLASNLSSMKKASVASSICFISRLVYFICGLD
AVITSIIKMPKELFQSSKVSFVLSAINALDGQNRLGLVVSSTRHFLKYQEEISRMQFLIA
LGKLVKNGSDCLDIRSGIAYLRKALHMFPNCNLMRNLLGYLLLFSEELNNDHMATRCCNM
DNPDMSDQEGLKSAYDIHGAGAVACYATGNNNPKFTFPTCSKKCSSHPRAIKSLQKYIHQ
KPWNHDARYLLVLNYLQKAREQRFPQHLCRTLNRLIQAALSNELYSKTEMNYQYRHFQLL
LCASEISLQCGNHTSCIADAKKASQLALPDNYLFFAHLLLCRLYAMKDDHLNFRKEYARC
LELRTDCHIGWICLKLMECQYELEIDSNAIDLSFEECIKRDGNSWNMWMAVYNLVRGVNL
LQKRDLVSAEEFMAQACSLAGFESCLFLCHGAICMELVRLHKSPHFLSRAVKSLTKVHEL
SPIPVPFASILLAQAEGSLGSKERWDRTLRLEWYNWSPEMRPAELYFQMHLLARELKVGL
NSKSSTESSQSPHRWVIRAIHMNPSCMRYWRVLQKLME
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcaaacccccacagatgaagaagatctcttccgacgcttgcaggattcccca
gacgacgcctctctgcatttcgacattggtttactgttatggaataaagaacatgaagaa
gatgcaaaggaaaaagctactcagcattttattctatcggccaaattaaaccctaaaaac
ggtgaatctttcaaatatctcggccattattatcgatgtgtttcgcttgatgctcagaga
gctctcaagtgttaccagcgagcagttgctatcgatcctgatgattacgagtctggggaa
gctctgtgtgatttgcttgaccaagaaggaaaggacagtttggaggttgcagtatgcctt
gaagcttctgaaatgtcaccacgggctttttgggctttccgtagattgggtttcctgctg
gttcatcaaaagaaatggtctgaagctgttcagagcctccaacatgctatacgaggctat
cctacttgtgctgatttgtgggaagctctgggacttgcttatcagcggctgggcaggttt
actgcagctgtaaagtcttatggccgcgcaatcgagttggataataagatggtctttgct
ttggttgaaagtggaaatatctcgttgacacttggtcaatttaaaaagggggttgaacaa
tttcaacaagctttggagattttgccagattgtgtgcctgcgcaatttggacttgctttg
gggctgcttagtttggcaaaagattgcattagcataggagcatatcagtggggagcttca
ttgttagaggaagcatccgaggttgccagagagagtgctcgttctttcacgaatatctca
tgtatttggaaactacatgcagatattcagcttgcatatgcaagatgtaatccttggatt
gaggaggtccaacaattggaatctaataaggaagccttcagtgcttctatcaattcttgg
aggaagacctgctttttggctgcaggacgtgctaaattttcataccaacgagctttacac
ttgtctccatggcaagcaaacatctacagtgacattgcagtaacttcagatcttattacc
tcattaagcaaaaattacacacaagactcaagtgcacggcagctagcagaaaaaatgtct
attggagccttgctacttgagggtcacaattatgagttctgggtggcattggggtgtttg
tctaatcataatgaactaaatcagcatgccttgatccgaggactgcagttaaatgtttct
ctagctgttgcttggggatatcttgggaagttgtatcttaaagcggatgaaaagcaattg
gcaaggcaagtatttgatcgtgcgcgaagtatcgatcccagccttgcattgccatgggca
agcatgtctgctgagtcttatgtgagtaaggagtctgcaccagacgaggcatttgaaagc
tgttcccgagctgtgcagataatgcctttagctgaattccaaattgggctaactaagctt
gctttgctgagtggccatcttgcatcttcacaggtttttggagctattcagcaggctgtg
cagcattcccctcactatcctgaatcccataacttacacggactggtatgtgaggctcga
aaagattacaagtctgctgctacattttataggttagcacgccatgcagttagcattggc
tcagagagtaatcaaaactcacatatcagggatatttctatcaatttggctagatcactt
tccaaggcagggaatgccgctgatgctttgcaggaatgtgaaaatttgaacaaagaaggg
ctgcttgatgaagaaggtttccaagtgtatgctttctcgttatggcaacacggtgaatat
gatttggctctctctgtagctgggagtcttgcttcaaatctttcttctatgaaaaaagca
tctgtggcgtcatccatttgttttatcagtagattagtgtacttcatatgtggactggat
gcagtcatcactagcattatcaagatgccaaaagagctatttcagagttcaaaagttagt
tttgttctgtcagctatcaatgctcttgatggacaaaaccgtcttggattggttgtctca
agtacccggcattttctcaaatatcaagaagaaatttctaggatgcaatttttaatagcg
cttgggaaattggtgaaaaatggatctgattgccttgacattagaagtggaattgcctac
ctcaggaaagcactgcacatgtttcctaactgtaatttgatgaggaatcttctgggctat
ctcttgctatttagtgaagagctaaacaatgatcatatggcaactaggtgttgtaatatg
gacaatcctgatatgtctgatcaagaaggtttaaaatcagcctatgatattcacggcgct
ggagcagttgcttgctatgccaccggcaacaacaatccaaagtttacttttccaacttgt
tcaaagaagtgttccagtcatccacgagctatcaaatccctgcagaaatacattcatcag
aaaccatggaatcatgatgcccgctacttgcttgttcttaactatcttcagaaggcacgt
gaacaaagatttcctcaacatctctgtcgtacactaaatcgtctaattcaagctgccctt
tcaaatgaattgtatagcaaaacagaaatgaactatcaatataggcacttccaacttcta
ctttgtgcttctgagatcagtttacaatgtgggaatcacacgagctgtattgctgatgct
aaaaaggcttctcaacttgcgcttcctgataattatttattctttgcacatctactattg
tgccgtttgtatgccatgaaagatgatcatctaaattttcggaaagaatatgcaaggtgt
ttggagctcaggacagattgtcatattggttggatctgtctcaaacttatggaatgccaa
tacgaactggagatcgattcaaatgccatagacttgagcttcgaagaatgcattaaaagg
gatggaaattcatggaatatgtggatggctgtatataacttagtgagaggagtgaatttg
ttgcaaaaaagggatttagtctcagccgaagagtttatggcacaggcttgttcattggcg
ggttttgaaagctgcctttttctatgtcatggtgccatctgtatggagcttgtcaggctg
cataaaagtcctcacttcttatcacgggccgttaagagccttaccaaagttcacgagctt
tccccgattcccgtgccttttgcctcaatattattagcgcaagcagaaggaagccttggt
tctaaggagagatgggacagaaccctccgtcttgaatggtataattggtcaccagaaatg
aggcctgcagagctctactttcaaatgcatttgcttgcaagagagttgaaagttgggctg
aactctaaatcaagcacggagtcctctcaaagtcctcacagatgggttattcgagcaata
cacatgaacccttcttgcatgcgatattggagggttttacagaagcttatggaataa
DBGET
integrated database retrieval system
