Vicia villosa (hairy vetch): 131653120
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Entry
131653120 CDS
T09680
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131653120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131653120
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
131653120
U7-dependent histone pre-mRNA processing factors
131653120
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
BPS
Motif
Other DBs
NCBI-GeneID:
131653120
NCBI-ProteinID:
XP_058779156
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Position
LG2:complement(178888848..178911015)
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AA seq
740 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNLLIDCGWNDHFDRTLLDPLSRVASTIDAVLL
SHPDTLHLGALPYAMKKLGLSAPVYSTEPVYRMGLLTMYDQFLSRKQQVSEFVHFTLDDI
DSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRK
ERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDVLKKTLRAGGNVLLPVDTA
GRILELVLMLESYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIF
LLKNITLLVNKADLDNAPEGPKVVLASMASLEAGFSHDIFVDWGNDINNLVLFTERGQFG
TLARMLQADPPPKAVKVTVSERVPLVGQELIEYEEKQNQIKKEEALKASLIKEEELKASQ
GADNNTTDRMVIDTGNNQPTPEVAVAKTGGYKDVFIDGFVPPTSVAPMFPCYENASEWDD
FGEVINPDDYVIKEEDMDQIANNLGGDINGKLDEGAASLIFDTKPSKVIAHERTVQVRCS
LVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATDHLKQHCLKNVCPHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVLFKKLGEYEIAWVDAEVGKAENDTLSLLPISGAPRPHK
SVLVGDLKLADFKQFLSTKGVPVEFAGGALRCGEYVTVRKVGDATQKGAGSGTQQIIIEG
PLCEDYYKIRDYLYSQFYLL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcagtgcaagtaacaccactttgtggagtgtacaatgaaaaccctctctct
tacttggtttccattgatggcttcaacctccttattgactgtggttggaatgaccacttt
gaccgtaccctacttgaccccctttccagggtagcatcaactatagatgccgttttactt
tcacatcctgacacactccaccttggtgccttaccttatgccatgaagaagcttggactc
tctgctcctgtttattcaactgagcctgtctatagaatgggacttctcactatgtacgac
caattcctctcaagaaagcagcaagtatcggaatttgttcatttcactctagatgatatt
gattctgctttccaaagtgtaacaaggctaacttactctcagaatcatcacctctctggc
aagggagagggaattgtgattgcaccacatgttgctggacatcttttgggaggcacgata
tggaaaattacaaaggatggtgaagacgtcatatatgctgttgatttcaatcacaggaaa
gaaaggcatttgaatggaactgttctaggttcttttgtgcggccagctgttctaataact
gatgcttataatgctttgaacaatcagccttacaggcgtcaaaaggacaaagaatttgga
gatgtcttaaagaagactctaagggcaggtggaaatgtattactacctgttgacactgct
ggacgaatattggaacttgttctgatgttggaatcgtattgggcggatgagaacttgaac
tatcctatatactttcttacatatgttgcatccagcactattgattatgtgaagagtttc
cttgagtggatgagtgattccatagcaaagtcttttgaacaaactcgtgaaaatatattt
cttttgaaaaatatcacacttctggttaacaaggctgaccttgacaatgctcctgaaggt
ccaaaggttgttcttgcatccatggcaagtttggaagcaggtttttcacatgatatattt
gttgattggggaaatgacatcaataatcttgtgctttttactgaaagaggccagtttggc
acgctagctcggatgcttcaggccgacccacctccaaaagctgtcaaagtcactgtatcc
gaacgggttcctttggttggtcaagagctaattgaatatgaggaaaaacaaaaccaaata
aagaaagaagaagctttaaaagctagtcttataaaagaggaagagttgaaagcctctcaa
ggggccgataataatactactgatcgtatggtcattgatacaggcaataatcaaccaacg
ccagaagtggctgttgcaaaaactggaggatacaaagatgtattcattgatgggtttgtc
cctccaaccagtgttgccccaatgtttccctgttatgagaatgcatcagaatgggatgat
tttggtgaagtcataaatccagatgattatgtaattaaggaggaagacatggatcagata
gcaaacaatttaggtggtgatataaatggaaaactagatgaaggtgctgcaagtttgata
tttgatacaaagccgtcaaaagttatagctcatgaaaggactgtccaagtcaggtgttcg
ctggtttacatggattttgaaggtcgttcagatggaagatcaattaagaacattctctcc
catgtggctcctcttaagctggttttggtgcatggatctgctgaagctacagaccatctg
aagcagcattgcctgaagaatgtgtgtcctcatgtttatgctcctcaaattgaagagact
atcgatgtaacctctgatttatgtgcttacaaggttcaattatctgagaagttaatgagt
aatgtactcttcaaaaagctgggagaatatgaaatagcttgggttgatgccgaagtaggg
aaggcagagaatgacacgctttcgcttctccccatttctggcgcacctcgtccgcataaa
tctgttcttgttggtgatttgaaattggcagatttcaagcagtttctctcaaccaaaggc
gttccggtggagtttgctggcggggctttgcgttgcggtgaatacgtaactgttcgaaag
gttggggatgcaactcagaagggtgctggttctggtactcagcaaattattattgaaggt
cctctgtgtgaagattactataaaattcgcgattatctctattctcagttttatttgctt
tag
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