Vicia villosa (hairy vetch): 131660636
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Entry
131660636 CDS
T09680
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03013
Nucleocytoplasmic transport
vvo03015
mRNA surveillance pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131660636
09122 Translation
03013 Nucleocytoplasmic transport
131660636
03015 mRNA surveillance pathway
131660636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131660636
03041 Spliceosome [BR:
vvo03041
]
131660636
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131660636
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131660636
Spliceosome [BR:
vvo03041
]
Complex C
Other components
EJC/TREX
131660636
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131660636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
131660636
NCBI-ProteinID:
XP_058785900
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All DBs
Position
LG3:22419239..22423593
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AA seq
427 aa
AA seq
DB search
MAETKDEAYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLTDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILAL
ARDKDLSLKNVRHFVLDECDKMLESLDMRKDVQNIFKLTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEIDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaccaaggacgaagcttacgaggaagagcttctcgactacgaagaggaagaa
gacaaagctcccgacaccaacggagctaaagtcaacggtgaagctaccaagaagggctat
gttggaatccacagttcaggctttcgagactttcttctcaaaccagagcttcttcgggct
attgtcgattcgggatttgaacatccatctgaagtgcaacacgagtgcatacctcaagca
atcctgggaatggacgtaatctgtcaagctaaatctggaatgggaaagactgctgtcttt
gttctctcgactttgcagcagattgatcctgttccaggtcaagtatctgcacttgttctg
tgtcataccagagagttagcttaccagatatgccatgagtttgagaggtttagcacgtac
ttaacagatctgaaggttgctgtcttttatggtggggtcaatatcaaagttcacaaggat
ctgttgaaaaatgagtgccctcaaattgttgtcggtacgcctggaagaatcctagcattg
gctagggataaggatctttctttgaagaatgttagacatttcgttttagatgaatgtgat
aagatgcttgaatcactagacatgaggaaagatgttcaaaacattttcaagttgactccc
catgataagcaagttatgatgttttcagcaacactcagcaaggaaatccgcccagtctgc
aaaaagtttatgcaagatcctatggaaatttatgttgacgatgaagccaagttaaccctt
catggacttgttcagcactacatcaaattgaaagaggaggagaaaaaccgcaagttgaat
gatcttctcgatgcactagatttcaaccaagttgttatctttgtgaaaagtgttagtaga
gctgctgagctggacagactactcatagaatgcaattttccatctatatgcattcactct
ggcatgtcccaggaagaaaggttaaagcgttatagaggtttcaaggaggggcatacaagg
attcttgttgctacagatttggttggtagagggattgatatcgagcgtgtcaatattgtt
ataaactatgacatgcctgattctgcagacacttacttgcacagggttggccgtgctgga
agatttggtaccaaaggccttgcaatcacatttgtttcatgttctactgatgttgatgtt
ctcaacaatgttcagtcaaggtttgaaatagatataaagcagcttcctgagcagattgat
acttctacctacatgccatcgtag
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